Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., ribosomal large subunit pseudouridine synthase C (RefSeq) from Shewanella sp. ANA-3

 Score =  106 bits (265), Expect = 1e-27
 Identities = 77/223 (34%), Positives = 113/223 (50%), Gaps = 15/223 (6%)

Query: 347 LSNPAQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRL 406
           LS  +Q +D  I+++D+ ++V+NKPA      G  V   V+  L++   Q + +  +HRL
Sbjct: 98  LSRVSQLED-RILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLELVHRL 156

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCG-DLDDR 465
           D  TSG+L+ A  R A K +  Q   + +QK Y+AL++G+ S     ++ PL    L   
Sbjct: 157 DKDTSGVLLVAKKRSALKHMHDQLRYKKMQKDYLALVKGEWSAQDKVVKQPLLKLTLKSG 216

Query: 466 PRQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
            R      +GKP+ T ++ VQ  Q  T V   P TGRTHQ+RVHC +   +  PI  D+ 
Sbjct: 217 ERIVRVNAEGKPSETRFKIVQRYQGCTLVQASPVTGRTHQIRVHCQY---MGHPIACDEK 273

Query: 526 YGLQD----------KRLFLHAEQLSFAHPYTKQPMTFQVDAD 558
           Y  Q            RLFLHA +L F HP   + M      D
Sbjct: 274 YSEQAFDDSMRALGLTRLFLHAAELMFIHPENDEVMRVSAPLD 316