Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., pseudouridine synthase (RefSeq) from Shewanella sp. ANA-3

 Score =  138 bits (348), Expect = 2e-37
 Identities = 83/204 (40%), Positives = 115/204 (56%), Gaps = 16/204 (7%)

Query: 360 YQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGLLVFA 417
           YQD  ++++NKP+  LS PG   H  D  LTRL+  +        +HRLD +TSG++VFA
Sbjct: 18  YQDRDLIIINKPSGLLSNPGRAAHTFDCALTRLQRLYPDT---ILVHRLDCATSGIMVFA 74

Query: 418 LTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKV---CWQQ 474
             ++A  QL+ QF  R  +K Y+A + G +++  G I L +  D +  P QK        
Sbjct: 75  RNKKAESQLKTQFQDRQNEKVYIAEVMGGIAKDAGIIDLAIAPDPEHPPYQKTQTPGTAG 134

Query: 475 GKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQD---- 530
            K ALTH+  ++  +N T V L P TGRTHQLRVH    L L  PI+GD+ YG  +    
Sbjct: 135 AKSALTHYRVLERRENSTLVELTPQTGRTHQLRVHM---LALGHPILGDEFYGDDEVIKA 191

Query: 531 -KRLFLHAEQLSFAHPYTKQPMTF 553
             RL LHA+ L F HPY+ + M F
Sbjct: 192 RPRLCLHAQSLRFTHPYSGKAMHF 215