Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., ribosomal large subunit pseudouridine synthase A (RefSeq) from Shewanella sp. ANA-3

 Score =  163 bits (412), Expect = 7e-45
 Identities = 94/212 (44%), Positives = 128/212 (60%), Gaps = 15/212 (7%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPG---VHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSG 412
           + ++YQD  I+VVNKP+  LSVPG    H +DSV  R+KA+    + V   HRLDM+TSG
Sbjct: 14  LDVLYQDKDIIVVNKPSGLLSVPGRDPAH-YDSVYARVKAEHPHCQIV---HRLDMATSG 69

Query: 413 LLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCW 472
           ++V AL R A ++L++QF  R   K Y+A + G +  T G +  PL  D  +RP+QKV  
Sbjct: 70  VIVVALIRSAERELKRQFHDRETSKTYLARVAGHVKNTTGSVDYPLICDWPNRPKQKVDH 129

Query: 473 QQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYG----- 527
           + GKP+LTH+E +   +  T V L P TGR+HQLRVH    + L  PI+GD  Y      
Sbjct: 130 EIGKPSLTHFEVLSRAKRSTLVKLKPITGRSHQLRVHM---MALGHPILGDGFYADPLAK 186

Query: 528 LQDKRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
               RL LHA +L+  HPYT + MTF  +A F
Sbjct: 187 SLAPRLLLHAAELTIKHPYTGESMTFSANASF 218