Pairwise Alignments

Query, 403 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella amazonensis SB2B

 Score =  116 bits (291), Expect = 1e-30
 Identities = 88/364 (24%), Positives = 165/364 (45%), Gaps = 17/364 (4%)

Query: 15  LLAMMIIATGQVGVSIYLPSLPLISRDLQVDQASAQMLVTLFLLGFGGSQLFYGALSDAV 74
           LL+M+    G +   +YLP+   I   L    +   M +T FL G    QL YG+L D  
Sbjct: 20  LLSML----GFLATDMYLPAFNQIESSLNTSASLVAMTLTCFLGGLAIGQLAYGSLCDKF 75

Query: 75  GRRPTFLLGQGIYLLGTVLCVMMSDHFQALEFGRLLQGLGAGSASVLGRSVLRDSYDGFH 134
           G+R T + G G++ + ++L +  +++       R++Q  GA SA+V+ ++++ + +D   
Sbjct: 76  GKRNTLMAGLGVFAVSSIL-LGFTENISVFFVLRVIQAFGACSAAVIWQALVMEKFDEGE 134

Query: 135 LTKALSYLSITASIMPIIAPVLGGWLAYHLSWQSVFIFVLLYIGAIFTLGLMILPETLPY 194
             K  S +    ++ P +AP++G W++    W+++FI +L  +G +      + P     
Sbjct: 135 ARKVFSSIMPLVALSPALAPLMGAWVSEQFGWRAIFI-ILAIVGLLLA---AMTPALAKE 190

Query: 195 PKRRVQWRGIVINYAKLLTNQQVTSSASYNWLSYLASLVTLSILPFLLQKQLGMTAADYG 254
            + R Q   I++    +L N+   ++ +       A    L++ P ++Q   G  AA+ G
Sbjct: 191 SRTRSQSEPILVK--NILKNRAFQNNVAIFGACSAAFFCYLTLWPAVMQHH-GYAAAEIG 247

Query: 255 STLIIPSSGLLLGSVLVNMLTSRFSVRQLLGCAISLMVFAGLWL-LLTEF--SVFNLIWA 311
            + I  +   +LG           S   +    I+  V   L L LLT+    +  ++W 
Sbjct: 248 LSFIPQTLAFMLGGFACKKALHSHSPEAIKNMLITGFVVLSLVLFLLTQLGAGILAVLWV 307

Query: 312 FTWLSIAQGISFPLATTLLLSPHKSQAGAVSALSGSIQMGIAGLLGG--YLVEHWVTSQN 369
           F  L+   G  +PL  T  L+P  + A   +     +Q+G+A +      L+ HW     
Sbjct: 308 FAALAAINGAVYPLLVTDALAPFSNNATKAAGWQNFLQLGMAFIASAAVALIAHWFEKAI 367

Query: 370 AMGV 373
             G+
Sbjct: 368 GTGI 371