Pairwise Alignments

Query, 403 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., multidrug efflux MFS transporter EmrD from Rahnella sp. WP5

 Score =  143 bits (361), Expect = 8e-39
 Identities = 111/382 (29%), Positives = 184/382 (48%), Gaps = 23/382 (6%)

Query: 14  MLLAMMIIATGQVGVSIYLPSLPLISRDLQVDQASAQMLVTLFLLGFGGSQLFYGALSDA 73
           +++ ++++A GQ+  +IY+P++  ++  L V   + Q ++  +LL +GGSQL YG LSD 
Sbjct: 10  LIMLILLVAVGQMAQTIYVPNIADMATSLAVKPGAVQRVMAAYLLTYGGSQLVYGPLSDN 69

Query: 74  VGRRPTFLLGQGIYLLGTVLCVMMSDHFQALEFGRLLQGLGAGSASVLGRSVLRDSYDGF 133
           +GR+P  L G  I+L+G    +M +     + F   +QGLG G A V+ R++ RD Y G 
Sbjct: 70  IGRKPVILTGLMIFLIGAAGAMMSTSLTMLIAFA-AIQGLGTGVAGVMARTMPRDLYSGG 128

Query: 134 HLTKALSYLSITASIMPIIAPVLGGWLAYHLSWQSVFIFVLLYIGAIFTLGLMILPETLP 193
            L  A S L++   I P++APV+GG L+  L W++ F F+L+    +       LPET P
Sbjct: 129 ALRHANSLLNMGILISPLLAPVIGGALSAWLGWRASFGFLLILCAGVAFSMYRWLPETRP 188

Query: 194 YPKRRVQWRGIVINYAKLLTNQQVTSSASYNWLSYLASLV--TLSILPF------LLQKQ 245
                   R ++ +   LL        A  N+  YL  LV     +  F      L+   
Sbjct: 189 EFTADHPPRNMLGSLRLLL--------ADANFSRYLVMLVGALAGVAVFEASCGVLMGGV 240

Query: 246 LGMTAADYGSTLIIPSSGLLLGSVLVNMLTSRFSVRQLLGCAISLMVFAGL--WL--LLT 301
           LG++        I+P      G+         F  +QL+  ++   + AGL  W+   L 
Sbjct: 241 LGLSGVMVSVLFILPIPAAFFGAWYAGRAEKSF--QQLMWHSVISCLLAGLAMWIPGWLG 298

Query: 302 EFSVFNLIWAFTWLSIAQGISFPLATTLLLSPHKSQAGAVSALSGSIQMGIAGLLGGYLV 361
             +++ L+   +      G+ FPLATT  + P    AGA  AL G +Q   +GL+     
Sbjct: 299 IMNIWTLVVPASLFFFGAGMLFPLATTGAMEPFPYLAGAAGALVGGLQNMGSGLVAWMSA 358

Query: 362 EHWVTSQNAMGVFYILVGITML 383
               T Q ++G+    + + +L
Sbjct: 359 MLPQTGQFSLGLLMFAMALLIL 380