Pairwise Alignments

Query, 403 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  133 bits (335), Expect = 8e-36
 Identities = 102/392 (26%), Positives = 176/392 (44%), Gaps = 9/392 (2%)

Query: 10  RRTPMLLAMMIIATGQVGVSIYLPSLPLISRDLQVDQASAQMLVTLFLLGFGGSQLFYGA 69
           RR  + + M ++    + + IYLPS+P ++ +  V  +  Q  + LFL   G  Q+  G 
Sbjct: 2   RRNLLPILMSLVLLSPLAIDIYLPSMPTMAAEFAVSASEVQSTLVLFLFAMGVGQILIGP 61

Query: 70  LSDAVGRRPTFLLGQGIYLLGTVLCVMMSDHFQALEFGRLLQGLGAGSASVLGRSVLRDS 129
           L+D  GRRP  L G  +Y   ++L     + F  L+  R+LQGL A S S++  S +RD 
Sbjct: 62  LADRYGRRPVALFGVLLYGASSLLAAAAIE-FHWLQIARVLQGLAACSTSIVVFSAVRDC 120

Query: 130 YDGFHLTKALSYLSITASIMPIIAPVLGGWLAYHLSWQSVFIFVLLYIGAIFTLGLMILP 189
           Y      K  SYL+    ++P +AP LGG LA    W+S F+F+ LY   +  L    LP
Sbjct: 121 YSPKEGAKIYSYLNGAICVIPALAPTLGGLLAMQFGWRSTFVFMTLYAILMMLLVGYRLP 180

Query: 190 ETLPYPKRRVQWRGIVINYAKLLTNQQVTSSASYNWLSYLASLVTLSILPFLLQKQLGMT 249
           ET P              Y  +L+N      A     +  A L  +S  P  L   LG++
Sbjct: 181 ETRPANTVSTGPLYRWSRYKPVLSNTHFLFYAFACMSAMAAILSYVSYSPVWLIGHLGVS 240

Query: 250 AADYGSTLIIPSSGLLLGSVLVNMLTSRFSVRQLLGCAISLMVFAGLWLLLTE------- 302
              +     + +   ++      ++  +   R     A++L+V + ++++  +       
Sbjct: 241 ELAFSGLFGLNALVNIVACFAAPVVIRKLGNRPTAILALALLVLSAVFIIAAQAFGPSAG 300

Query: 303 -FSVFNLIWAFTWLSIAQGISFPLATTLLLSPHKSQAGAVSALSGSIQMGIAGLLGGYLV 361
             + F  +     L I        AT++ LS    +AG  +A+ G IQM  A ++ G + 
Sbjct: 301 MAAAFAFMLPMMLLCIGFAFLLGPATSMALSAFGERAGTATAMLGFIQMSGASVIAGLVQ 360

Query: 362 EHWVTSQNAMGVFYILVGITMLSVLIATKKAH 393
           +  +T+  A+ +      I +LS++  ++  H
Sbjct: 361 QTNLTAPYAVALVMGFFSIGLLSMMAISRFDH 392