Pairwise Alignments

Query, 403 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., multidrug resistance protein D (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  155 bits (393), Expect = 2e-42
 Identities = 121/393 (30%), Positives = 197/393 (50%), Gaps = 17/393 (4%)

Query: 14  MLLAMMIIATGQVGVSIYLPSLPLISRDLQVDQASAQMLVTLFLLGFGGSQLFYGALSDA 73
           + + + ++A GQ+  +I++P+LPLI++ L VD +  Q ++  +LL +G  Q  YG LSD 
Sbjct: 26  LFMLVFMVACGQMAQTIFVPALPLIAQGLAVDASKLQAVMACYLLAYGLFQFIYGPLSDR 85

Query: 74  VGRRPTFLLGQGIYLLGTVLCVMMSDHFQALEFGRLLQGLGAGSASVLGRSVLRDSYDGF 133
            GR+   L+G GI+++G +L    +  F  L    LLQGLG  SA  L RS+ RD Y G 
Sbjct: 86  YGRKLPLLIGIGIFIIGALLATQATS-FNQLICASLLQGLGTASAGALCRSIPRDHYFGD 144

Query: 134 HLTKALSYLSITASIMPIIAPVLGGWLAYHLSWQSVFIFVLLYIGAIFTLGLMI-LPETL 192
           +L K  SY+S+    +P++AP LG   + +  WQ+V+ +VL   G    L L     E+L
Sbjct: 145 NLLKFNSYVSMAVVFLPLVAPFLGSLASAYFGWQAVY-WVLFGFGVFVWLLLCFGFKESL 203

Query: 193 PYPKRRVQWRGIVINYAKLLTNQQVTSSASYNWLSYLASLVTLSILPFLLQKQ-LGMTAA 251
           P  KR  Q   ++ +Y  +L ++   +   ++ ++  A +     +  +L  Q L +T  
Sbjct: 204 PKDKREQQ--PVLASYRHVLRHRSFRAYL-FSLIATFAGIAAFEAIAGVLYGQYLQLTPF 260

Query: 252 DYGSTLIIPSSGLLLGSVLV----NMLTSRFSVRQLLGCAISLMVFAGLWLLLTEFSVFN 307
                 + P  G LLG+++         S F    LLG     M+  GL+ L+  +S+  
Sbjct: 261 MVSCYFVAPIPGYLLGALIAGRQKQAQRSVFQGVALLGAGALFMLIPGLFQLVVGWSL-- 318

Query: 308 LIWAFTWLSIAQGISFPLATTLLLSPHKSQAGAVSALSGSIQMGIAGLLGGYLVEHWVTS 367
           L+ +  + S A G+ FP  T+  L P   QAG   AL G +Q   AGL    +    +  
Sbjct: 319 LVGSILFFSGA-GMLFPTLTSAALEPFPRQAGIAGALLGGLQNFGAGLAALTMSLVPMGG 377

Query: 368 QNAMGVFYILVGITMLSVLIATKKAHSQPSAAQ 400
           Q ++G   +L  + +L V++A   A  Q    Q
Sbjct: 378 QLSIG---LLSAVMVLLVIVALHYARDQNDTHQ 407