Pairwise Alignments

Query, 403 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (287), Expect = 3e-30
 Identities = 83/348 (23%), Positives = 153/348 (43%), Gaps = 17/348 (4%)

Query: 14  MLLAMMIIATGQVGVSIYLPSLPLISRDLQVDQASAQMLVTLFLLGFGGSQLFYGALSDA 73
           +L   ++   G +   +YLP+   I   L    +   M +T FL G    QL YG L   
Sbjct: 17  LLYLALLSMLGFIATDMYLPAFKAIESSLNSSPSQVAMSLTCFLAGLALGQLIYGPLVSK 76

Query: 74  VGRRPTFLLGQGIYLLGTVLCVMMSDHFQALEFGRLLQGLGAGSASVLGRSVLRDSYDGF 133
           +G+R   L+G  ++ L +V  +  SD    L   R  Q +GA SA V+ ++++ + YD  
Sbjct: 77  LGKRYALLIGLAVFALSSV-AIANSDSVMMLNIARFFQAIGACSAGVIWQAIVVEQYDAE 135

Query: 134 HLTKALSYLSITASIMPIIAPVLGGWLAYHLSWQSVFIFVLLYIGAIFTLGLMILPETLP 193
                 S +    ++ P +AP+LG ++     W+++FI + +     F L LM L   +P
Sbjct: 136 KAQGIFSNIMPLVALSPALAPILGAYILNEFGWRAIFISLCV---IAFLLVLMTL-YFVP 191

Query: 194 YPKRRVQWRGIVINYAKLLTNQQVTSSASYNWLSYLASLVTLSILPFLLQKQLGMTAADY 253
              +    +   ++Y ++L N +   +         A    L++ P +++ Q G  A + 
Sbjct: 192 GKSKHQDIKPSAVSYGQILKNTRYLGNVVIFGACSGAFFAYLTVWPIVME-QHGYQATEI 250

Query: 254 GSTLIIPSSGLLLGSVLVNMLTSRFSVRQLLG--------CAISLMVFAGLWLLLTEFSV 305
           G + I  +   ++G     +L  R    + L         C +S+++F    LL    ++
Sbjct: 251 GLSFIPQTIMFIVGGYASKLLIKRIGADKTLNVLLSIFGICVVSIVLFT---LLFKTITI 307

Query: 306 FNLIWAFTWLSIAQGISFPLATTLLLSPHKSQAGAVSALSGSIQMGIA 353
           F L+ +F+ L+ A G  +P+     L      A   + L   +Q+ IA
Sbjct: 308 FPLLISFSILAAANGAIYPIVVNSALQQFTQHASKAAGLQNFLQITIA 355