Pairwise Alignments

Query, 403 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella sp. ANA-3

 Score =  115 bits (287), Expect = 3e-30
 Identities = 88/361 (24%), Positives = 157/361 (43%), Gaps = 22/361 (6%)

Query: 15  LLAMMIIATGQVGVSIYLPSLPLISRDLQVDQASAQMLVTLFLLGFGGSQLFYGALSDAV 74
           LL+M+    G +   +YLP+   I        +   M +T FL G    QL YG L   +
Sbjct: 22  LLSML----GFIATDMYLPAFKAIESSFNSTPSQVAMSLTCFLAGLALGQLIYGPLVSKL 77

Query: 75  GRRPTFLLGQGIYLLGTVLCVMMSDHFQALEFGRLLQGLGAGSASVLGRSVLRDSYDGFH 134
           G+R   +LG GI+ L +V  +  SD    L   R  Q +GA SA V+ ++++ + YD   
Sbjct: 78  GKRYALILGLGIFALASV-AIANSDSILMLNIARFFQAVGACSAGVIWQAIVVEQYDAEK 136

Query: 135 LTKALSYLSITASIMPIIAPVLGGWLAYHLSWQSVFIFVLLYIGAIFTLGLMILPETLPY 194
                S +    ++ P +AP+LG ++     W+++FI + +    +  + L  +P    +
Sbjct: 137 AQGIFSNIMPLVALSPALAPILGAYILNDFGWRAIFISLCVIAFLLVLMTLYFVPSHAEH 196

Query: 195 PKRRVQWRGIVINYAKLLTNQQVTSSASYNWLSYLASLVTLSILPFLLQKQLGMTAADYG 254
              R       ++Y ++L N +   +         A    L++ P +++ Q G  A + G
Sbjct: 197 QDTRPS----AVSYGQILKNTRYLGNVVIFGACSGAFFAYLTVWPIVME-QHGYQATEIG 251

Query: 255 STLIIPSSGLLLGSVLVNMLTSRFSVRQLLG--------CAISLMVFAGLWLLLTEFSVF 306
            + I  +   ++G     +L  R    + L         C IS++ F    LL+   ++F
Sbjct: 252 LSFIPQTIMFIVGGYASKLLIKRIGADRTLNVLLAIFGLCVISIVFFT---LLMKAETIF 308

Query: 307 NLIWAFTWLSIAQGISFPLATTLLLSPHKSQAGAVSALSGSIQMGIAGLLGGYLVEHWVT 366
            L+ +F+ L+ A G  +P+     L      A   + L   +Q+ IA      LV  W +
Sbjct: 309 PLLISFSILAAANGAIYPIVVNSALQQFTQNAAKAAGLQNFLQITIA-FGASSLVALWAS 367

Query: 367 S 367
           S
Sbjct: 368 S 368