Pairwise Alignments

Query, 295 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  145 bits (366), Expect = 1e-39
 Identities = 94/293 (32%), Positives = 157/293 (53%), Gaps = 10/293 (3%)

Query: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60
           +D + + K +  VV+EGSF  AA +L  +S  VSK +  LEE + V+LL RTTR V  TE
Sbjct: 3   LDRIDTMKAFTAVVQEGSFTKAADRLGLSSQLVSKYVSQLEEHLKVRLLNRTTRRVNVTE 62

Query: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120
           AG  +++R +  L   + + +   ++++T +GLL++ A ++ G   L   L +F Q++PD
Sbjct: 63  AGRAYFERCQQVLIDIEEMDNALTNLSETASGLLKVSAPMSFGIHHLPSALVQFQQQHPD 122

Query: 121 IRVQLITTTPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVPQ 180
           +R+  IT T  ++  L   + ++  I QL S S  A  L   +    ASP YLA+ G P+
Sbjct: 123 VRLD-ITLTDKKVDLLEDGVDVALRIGQLTSSSLIAKKLTPIKLVVCASPEYLAERGEPK 181

Query: 181 TLQELTEHNVLCWGEQTFREVKTAQGK------RLTLTGNFATTNPEALFYAGKAGMGII 234
           T  +L  HN L +   ++ ++  A G+       L +  + A  N + L  A  AG GI+
Sbjct: 182 TPADLIHHNYLHF---SYSDLGAAFGRFGEHFSALKIPSDLACNNGDMLVEAAIAGRGIV 238

Query: 235 VTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKQ 287
           V    ++ + L+ G L  +L D T +   +YA Y   ++  ++ + F+D L Q
Sbjct: 239 VQPTFLVSKALRSGKLKAILTDYTPEPFGLYAVYVHRKFLASKVRCFVDALSQ 291