Pairwise Alignments

Query, 295 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (410), Expect = 9e-45
 Identities = 100/300 (33%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60
           M+   +   ++ VVE GSF+ A +KL  + SA+SKRI  LE+ +G+QLL+RTTRS++ T+
Sbjct: 1   MEHFSALPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTD 60

Query: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120
           AGA +++  +  ++  Q  +D    + QTP G LRI   +  G  ++   + EFL+RYPD
Sbjct: 61  AGARYFEYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPD 120

Query: 121 IRVQLITTTPGQLPELHLDLF-----ISREIEQLNSLSFKATPLFEYQAAFYASPSYLAK 175
           I++Q+      Q+ +   DL      ++  I +L   S  A  +    +   ASP+YL +
Sbjct: 121 IQLQM------QMDDKITDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICASPAYLTQ 174

Query: 176 HGVPQTLQELTEHNVLCWG------EQTFREVKTAQGKRLTLTGNFATTNPEALFYAGKA 229
           HG+P T  ELT+HN L +       E +F      Q  R+   GN+   N +A+  A   
Sbjct: 175 HGLPMTPCELTQHNCLFYSYFQDGVEWSFHSPDGMQ--RVQPKGNYQVNNSDAINQACLD 232

Query: 230 GMGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKQKL 289
           G+GI      +++ +L+ G+L  LL D  + +  +YA YP+ +YQ T+  + ++ L  KL
Sbjct: 233 GLGIANLPRFIVEPDLQTGHLQALLTDYPLPEHGIYAVYPQRKYQPTKVTVLIEFLMAKL 292