Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1003 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

 Score =  213 bits (542), Expect = 3e-59
 Identities = 132/431 (30%), Positives = 227/431 (52%), Gaps = 13/431 (3%)

Query: 167 VRSQSLINQLRHEISHDNLTGLMNRNDLAEKLT-ALVQEDRHH--FTLAFLDIDEFRSIN 223
           +  Q    ++R    HD LTGL NR  L ++L  A++   R++   T+ FLD+D+F+ +N
Sbjct: 533 IERQLTEKRIRFMGDHDALTGLPNRTLLEDRLKQAMLYAQRYNRLVTVVFLDLDKFKLVN 592

Query: 224 DLHGHYLGDLVLKFVADAIKQAVPEEGYAFRIAADEFAFLTTDR-EPMKICQTILNKLAQ 282
           D  GH  GD +LK VA  +   V       R+  DEF  +  D+   +     +L+K+ +
Sbjct: 593 DSLGHSAGDELLKTVAQRMLGCVRRTDTVVRLGGDEFVIILFDQPSDLDGVTPVLHKIQE 652

Query: 283 DYID----QDRRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLL 338
             +         L ++ S+G+  Y  +  + D LL NA  A+   K       +FY + +
Sbjct: 653 AILRPIQLSGHTLHVTCSMGLATYPTDGTDTDTLLSNADAAMYRAKELGRNSFQFYTSEM 712

Query: 339 SNQYYRRTQIIEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVT 398
           +N+   +  + + LRS L+      E  ++ QP V          E L RW    LG+V+
Sbjct: 713 NNKVQGKLAMQDGLRSALNND----EFLLLYQPQVDLQSGQIIGVEALIRWQHPELGMVS 768

Query: 399 PLEFIEAAEQSGLIVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEH 458
           P++FI  AE++GLIV  G+ ++  AC   +  +      I +S+N SA +    +  ++ 
Sbjct: 769 PIKFIPQAEETGLIVPIGDWVIHSACRQNKAWQDAGWPPITMSVNISARQFIERD-LIDR 827

Query: 459 LLKTIKAYGFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYI 518
           ++  ++  G       +ELTE++++    +  S +  L+ +G  +++DDFGTGYSSL  +
Sbjct: 828 VMHALQESGLDPMYLELELTESLIMQDLQQAISKMKALQAMGISLSIDDFGTGYSSLAAL 887

Query: 519 HSYPIDCIKIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMG 578
            S+PI  +KID +FVR+L  N+  ++I   +I L ++L L ++AEGVE ++    L   G
Sbjct: 888 KSFPIARLKIDQSFVRDLPDNENDKAIATAVISLGHKLNLKVIAEGVETEEQQTFLRDNG 947

Query: 579 CEQIQGYYFSR 589
           C++IQGY+FS+
Sbjct: 948 CDEIQGYFFSK 958