Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1494 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  228 bits (582), Expect = 1e-63
 Identities = 147/422 (34%), Positives = 223/422 (52%), Gaps = 13/422 (3%)

Query: 176  LRHEISHDNLTGLMNRNDLAEKLT-ALVQEDR--HHFTLAFLDIDEFRSINDLHGHYLGD 232
            LR   S+D LT L NR    ++L  AL Q  R  +   L FLD+D F+ IND  GH++GD
Sbjct: 1062 LRLLASYDPLTNLPNRTLFQDRLDHALAQAHRTGNMVALLFLDLDRFKHINDSMGHHIGD 1121

Query: 233  LVLKFVADAIKQAVPEEGYAFRIAADEFAFLTTDREPMKICQTILNKLAQ----DYIDQD 288
            L+LK VA  ++  V E     R+  DEF  +       K    I  KL +     +I +D
Sbjct: 1122 LLLKAVAHRLQNCVREGDTVARLGGDEFTIILEGVAKTKAATVIAEKLIRAFQTPFILED 1181

Query: 289  RRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQI 348
            + L IS SIGI+ Y  +  ++  L+  A  A+   K       +FY   L+    R  Q 
Sbjct: 1182 QALNISPSIGISLYPMDASDSTSLVKYADTAMYHAKSLGRNNFQFYTLRLNEYAMRHVQ- 1240

Query: 349  IEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAEQ 408
               L + + + I + EL +V QP  +    +   FE L RWNS  LG ++P EFI  AE+
Sbjct: 1241 ---LEAGIKQAIVRQELSLVFQPKFRVSDGSITGFEALLRWNSKELGPISPAEFIPLAEE 1297

Query: 409  SGLIVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKAYGF 468
             G+I + G  ++  AC    +        + +++N SA +L      L  +   +   G 
Sbjct: 1298 IGIINQLGHWVVNEACRHMAQFAAAGFDDLHVAVNLSARQLKAD--ILSTIEVALAVAGL 1355

Query: 469  QADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCIKI 528
             A    +ELTE++++    E  ++L  L+ LG  +A+DDFGTGYSSL Y+  +P+D +KI
Sbjct: 1356 PAKCLELELTESMIMKSPQESVAVLQRLKALGVSLAVDDFGTGYSSLAYLKRFPLDTLKI 1415

Query: 529  DAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYYFS 588
            D  FVR++ T+    +I   II LA+ L+L++VAEGVEN+  L+ L + GC+Q+QG+   
Sbjct: 1416 DREFVRDISTDPDDAAITGAIIALAHSLELNVVAEGVENEAQLEHLRKHGCDQVQGFLLG 1475

Query: 589  RP 590
            +P
Sbjct: 1476 KP 1477