Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1431 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  225 bits (573), Expect = 1e-62
 Identities = 142/422 (33%), Positives = 227/422 (53%), Gaps = 16/422 (3%)

Query: 175  QLRHEISHDNLTGLMNRNDLAEKLTALVQEDRHHFTLAFLDIDEFRSINDLHGHYLGDLV 234
            +LR   ++D LTGL NR++L   L  LV++D HH TL  LD+D F+ IND  GH +GD +
Sbjct: 993  ELRKLTNNDLLTGLPNRSNLQVSLNNLVKKDTHH-TLMVLDLDNFKKINDSLGHQVGDEL 1051

Query: 235  LKFVADAIKQAVPEEGYAFRIAADEFAFLTTDREP-----MKICQTILNKLAQDYIDQDR 289
            L+ V+  +  A+P     +R+  DEFA L  D++P       I + +++     +     
Sbjct: 1052 LQLVSRRMSAALPGHTSLYRLGGDEFAVLL-DKDPDIGSAAAIAKGLVDAFVAPFELAGE 1110

Query: 290  RLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQII 349
            +L + VSIGI  Y  ++ N   LL  A +A+   K     R +FY   L+    R+ ++ 
Sbjct: 1111 KLVVGVSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYSESLNRNALRQLEVE 1170

Query: 350  EALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAEQS 409
              +R  L   + +    V  QP V          E L R N  T G++ P EFI  AE++
Sbjct: 1171 NLIRDGLRDDLFE----VYYQPKVDLRNSRMAGMEALVRLNHPTQGLIPPSEFIPLAEET 1226

Query: 410  GLIVEFGERILELACIAKQEL-EQGI-DQKIRLSINCSADELTHSNRYLEHLLKTIKAYG 467
            GLIVE G+ ++  AC A Q   EQG+ D ++ ++++     LT   + +E +L+  K   
Sbjct: 1227 GLIVEIGDLVMRKACFAAQRWREQGLFDGRVAVNLSSRQFALTDLQQRIESILRLTK--- 1283

Query: 468  FQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCIK 527
              A    +E+TE  ++ +  +   ++  L ++G  +ALDDFGTGYSSL+Y+  +PI  +K
Sbjct: 1284 LPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLK 1343

Query: 528  IDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYYF 587
            ID AFV ++  +     +V  II +A+ + L +V EGVE    L+ L  + CE++QGY +
Sbjct: 1344 IDKAFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEVPSQLNILRALKCEEVQGYIY 1403

Query: 588  SR 589
            S+
Sbjct: 1404 SK 1405