Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1484 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  220 bits (561), Expect = 3e-61
 Identities = 131/422 (31%), Positives = 222/422 (52%), Gaps = 11/422 (2%)

Query: 176  LRHEISHDNLTGLMNRNDLAEKLTALV---QEDRHHFTLAFLDIDEFRSINDLHGHYLGD 232
            LR   ++D LTGL NR+  A +L   +   ++      L FLD+D F+++ND +GH +GD
Sbjct: 1052 LRRLANYDVLTGLPNRSLFAARLAKCIHRAEQTEDKLALIFLDLDRFKNVNDSYGHSMGD 1111

Query: 233  LVLKFVADAIKQAVPEEGYAFRIAADEFAFLTTDR----EPMKICQTILNKLAQDYIDQD 288
             +L   A  ++  V E     R   DEF  L  D     E   +C+ ++ ++ + +    
Sbjct: 1112 ALLVEAASRLQSCVSENHTLCRFGGDEFVILMRDMVDIDEVNHLCEALIRQIEKPFELYG 1171

Query: 289  RRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQI 348
            R   IS SIG++ +  +    + L+ NA  A+   K       +++    + +     ++
Sbjct: 1172 REFFISTSIGVSLWPDDAKQPEVLIKNADQAMYHAKEEGRGNFQYFSAERNAEALYHLKL 1231

Query: 349  IEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAEQ 408
               LR  + +   + ELY   Q  + K  +     E L RW+    G + P  FI  AE 
Sbjct: 1232 EAELRKAMDR--QEFELYFQPQIDILKDDKVVG-MEALLRWHHPKEGYIRPDIFIRVAES 1288

Query: 409  SGLIVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKAYGF 468
             GLI+E    +++ AC+   +  +    +++LS+N SA      + +++ + + +K  G 
Sbjct: 1289 CGLIIEIDRWVIKQACLQGAKWAEHFGDELKLSVNVSAVHFRQPD-FIQDVQQALKESGM 1347

Query: 469  QADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCIKI 528
             A    +E+TE VL+ +       L  LRE+G ++A+DDFGTGYSSL Y+ S+ +  +KI
Sbjct: 1348 PAKMLGLEITEGVLMKELHVAKDHLKALREIGIEVAIDDFGTGYSSLAYLRSFDVSTLKI 1407

Query: 529  DAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYYFS 588
            D +F+ ++ TN+  ++I   II+LA  LKL +VAEGVE Q+ L++++  GC  IQGYYF+
Sbjct: 1408 DRSFLIDIATNEADQAIASSIIELARNLKLKVVAEGVETQEQLEQVFSRGCYIIQGYYFA 1467

Query: 589  RP 590
            +P
Sbjct: 1468 KP 1469



 Score = 28.1 bits (61), Expect = 0.003
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 247 PEEGYAFRIAADEFAFLTTDREPMKICQTILNKLAQDYIDQDRRL-KISVSIGITKYSGE 305
           P+ G AF +  DEF     D+E +      L     D +D D R  +   S G T+  G 
Sbjct: 842 PDRGDAFELKMDEFPIYADDQEKVFTAWKRLLSKQDDRLDVDYRYRRPDESWGWTRVRGR 901

Query: 306 KLNAD 310
            L  D
Sbjct: 902 ALEFD 906