Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 816 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  216 bits (551), Expect = 2e-60
 Identities = 134/423 (31%), Positives = 226/423 (53%), Gaps = 13/423 (3%)

Query: 175 QLRHEISHDNLTGLMNRNDLAEKLT---ALVQEDRHHFTLAFLDIDEFRSINDLHGHYLG 231
           ++ H  +HD LT L NR  L +++    A+         L  +DID F+ +ND  GH  G
Sbjct: 388 KMSHLANHDQLTDLPNRILLHDRINHACAVADSYDKSVALMLIDIDHFKYLNDSLGHSYG 447

Query: 232 DLVLKFVADAIKQAVPEEGYAFRIAADEFAFL----TTDREPMKICQTILNKLAQDYIDQ 287
           D V+K VA  ++  +       RI  DEF  L    T   +   I   I+  L   +   
Sbjct: 448 DQVIKQVAKRLQSLIDPNATLGRIGGDEFVLLLPSLTATSQVDSIATDIVRSLNTPFRID 507

Query: 288 DRRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQ 347
            +   +SVS+GI+ Y  + L A++L+ +   A+   K     R  ++   L  +  +R +
Sbjct: 508 GQEYTLSVSVGISIYPSDALRAEELMTHVDAAMYRAKDLGRNRFCYFSEDLEQELTKRHE 567

Query: 348 IIEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAE 407
           ++  LR+     I    + V  QP V    +     E L R    +  +++PL+FI  AE
Sbjct: 568 LVTLLRTA----IDTEAIEVYYQPKVDLKTKEIIGAEALARLYDPSGKLISPLDFIPLAE 623

Query: 408 QSGLIVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKAYG 467
           ++GLI + GE IL+ +C+A +  ++   + +++++N +A + T+   + + + K ++  G
Sbjct: 624 ETGLIHQLGEIILKQSCMAAKAWQKR-GRPLQIAVNIAAKQFTNPE-FCDSVAKVLELTG 681

Query: 468 FQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCIK 527
             +    +E+TE+ L+    E  ++L  L  LG  IA+DDFGTGYSSL+Y+  +P++ +K
Sbjct: 682 LDSSFLELEVTESSLMYDFDEALNVLNTLSSLGLSIAIDDFGTGYSSLSYLKFFPVNTLK 741

Query: 528 IDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYYF 587
           ID +FV+++L ++ S  IV  +I LA  LKL L+AEG+E+ + L KL  + CEQ QGY F
Sbjct: 742 IDQSFVKDMLGDEQSLDIVKAVIHLAKSLKLKLIAEGIEDAEQLQKLVALECEQGQGYMF 801

Query: 588 SRP 590
           S+P
Sbjct: 802 SKP 804