Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  221 bits (563), Expect = 1e-61
 Identities = 142/428 (33%), Positives = 220/428 (51%), Gaps = 13/428 (3%)

Query: 175 QLRHEISHDNLTGLMNRNDLAEKLTALVQEDRH---HFTLAFLDIDEFRSINDLHGHYLG 231
           QL H    D LT L NR  L  +L   +   +         F+D+D F+ IND  GH +G
Sbjct: 447 QLAHLAYFDPLTHLPNRMKLMIQLKQEIMHAKRLNSQLATVFIDVDLFKHINDSFGHSIG 506

Query: 232 DLVLKFVADAIKQAVPEEGYAFRIAADEFAFLTTDREPMKICQTILNKLAQDY-----ID 286
           D +L  +A  ++  + E+    RI +DEF  L +  +  +     +N+L Q +     + 
Sbjct: 507 DEMLVELAKRLRSQLQEQDVLSRIGSDEFVALISGIQYHEDATAAINQLRQVFEQPFVVS 566

Query: 287 QDRRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRT 346
               L+++ ++G++ Y  +  NAD LL NA  A+   K        FY   L+ +     
Sbjct: 567 TGDHLRLTATMGVSLYPSDGSNADTLLRNADAAMYRAKSEGRNNYAFYTESLTKESIEHL 626

Query: 347 QIIEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAA 406
           +    L+S L   + Q  LY++ QP V    R     E L RWN   LG ++P  FI  A
Sbjct: 627 K----LQSALYGALEQNALYLMYQPKVDLVTRKTVGVEALLRWNDPILGQISPSVFIPVA 682

Query: 407 EQSGLIVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKAY 466
           E+SGLI + G  +LE AC           Q  R+++N +  +L   N ++E + + +   
Sbjct: 683 EKSGLIYDIGLWVLETACQQGVHWLAAGKQFGRIAVNVAGQQLQR-NSFVEDVKRILTQT 741

Query: 467 GFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCI 526
           G  A    +E+TE+V+++        L +L +LG  +++DDFGTGYSSLNY+   PI  +
Sbjct: 742 GLPATCLELEVTESVMMNNPDVAIRDLKLLGDLGIVLSVDDFGTGYSSLNYLKKLPIHKL 801

Query: 527 KIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYY 586
           KID +FVR++  +  + +I   +I L + LKL++VAEGVE  +  D L Q  C+Q QGY 
Sbjct: 802 KIDQSFVRDIPFDTNNTAIAKAVIVLGHALKLEIVAEGVETAEQADFLTQNLCDQAQGYL 861

Query: 587 FSRPDLPS 594
           FSRP LP+
Sbjct: 862 FSRPQLPA 869