Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  216 bits (551), Expect = 4e-60
 Identities = 143/423 (33%), Positives = 228/423 (53%), Gaps = 18/423 (4%)

Query: 175  QLRHEISHDNLTGLMNRNDLAEKLTALVQEDRHHFTLAFLDIDEFRSINDLHGHYLGDLV 234
            +LR   ++D LTGL NR++L   L  LV ++ +H  L  LD+D F+ IND  GH +GD +
Sbjct: 985  ELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEINH-ALMVLDLDNFKRINDSLGHQVGDKL 1043

Query: 235  LKFVADAIKQAVPEEGYAFRIAADEFAFLTTDREPMKICQTILNKLAQDY-----IDQDR 289
            LK V+  IK +VP+    +R+  DEFA +      +     I  ++   +     ID ++
Sbjct: 1044 LKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAFNTVYEIDNEQ 1103

Query: 290  RLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQII 349
             L + VS+GI  Y  ++ N   LL  A +A+   K       +FY   L+    ++ +  
Sbjct: 1104 -LVLGVSVGIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESLNEHAIKQLETE 1162

Query: 350  EALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAEQS 409
              +R  L + + +    V  QP V     +    E L R N  TLG++ P +FI  AE++
Sbjct: 1163 NLIREGLKEDLFE----VYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPNDFIPLAEEN 1218

Query: 410  GLIVEFGERILELACIAKQEL-EQGIDQKIRLSINCSADE--LTHSNRYLEHLLKTIKAY 466
            GLIVE GE +L  AC A Q+  EQG+  K R+++N S+ +  L    + +E +L+  +  
Sbjct: 1219 GLIVEIGEIVLRKACFAAQKWREQGLF-KGRVAVNLSSRQFALPDLQQRIESILRLTQ-- 1275

Query: 467  GFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCI 526
               A    +E+TE  ++ +     +++  L ++G  +ALDDFGTGYSSL+Y+  +PI  +
Sbjct: 1276 -LPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTL 1334

Query: 527  KIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYY 586
            KID AFV ++  +     +V  II +A+ + L +V EGVE    L+ L  + CE+IQGY 
Sbjct: 1335 KIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEEIQGYI 1394

Query: 587  FSR 589
            FS+
Sbjct: 1395 FSK 1397