Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  220 bits (561), Expect = 2e-61
 Identities = 137/419 (32%), Positives = 216/419 (51%), Gaps = 11/419 (2%)

Query: 179 EISHDNLTGLMNRNDLAEKLTALVQ---EDRHHFTLAFLDIDEFRSINDLHGHYLGDLVL 235
           + ++D LTGL NR  L E L+A ++    +R+HF L FLD+D F+ +ND  GH +GDL+L
Sbjct: 571 QANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVNDTLGHAMGDLLL 630

Query: 236 KFVADAIKQAVPEEGYAFRIAADEFAFLTTDREPMK----ICQTILNKLAQDYIDQDRRL 291
              A  +K  V +     R+  DEF  + +     K    + + IL ++A+ Y   +   
Sbjct: 631 IETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILRRIAEPYYLGEETT 690

Query: 292 KISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQIIEA 351
            IS SIGIT Y  +  + + LL +A  A+   K     R  ++   +      R ++I  
Sbjct: 691 HISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLIHD 750

Query: 352 LRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAEQSGL 411
           LR    + +   E  +  QPIV          E L RW     G V+P EFI  AE +GL
Sbjct: 751 LR----QAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEFIPVAEDTGL 806

Query: 412 IVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKAYGFQAD 471
           IVE G  + E A     +  + +  +I++S+N S  +       L + L+ ++       
Sbjct: 807 IVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALLHNWLELLQQLDVTGA 866

Query: 472 EFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCIKIDAA 531
              +E+TE +LL  +  V   L   R+ G +++LDDFGTGYSSL Y+  + ID +KID +
Sbjct: 867 GVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQS 926

Query: 532 FVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYYFSRP 590
           F RN+ T++   ++   II +A++L + ++AEGVE +     L + GC+  QGY FS+P
Sbjct: 927 FTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDYGQGYLFSKP 985