Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  237 bits (604), Expect = 3e-66
 Identities = 150/422 (35%), Positives = 223/422 (52%), Gaps = 13/422 (3%)

Query: 176  LRHEISHDNLTGLMNRNDLAEKLT-ALVQEDRHH--FTLAFLDIDEFRSINDLHGHYLGD 232
            LR   S D LTGL NR    ++L  A+ Q  R +    L FLD+D F+ IND  GH++GD
Sbjct: 1078 LRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGD 1137

Query: 233  LVLKFVADAIKQAVPEEGYAFRIAADEFAFLTTDREPMK----ICQTILNKLAQDYIDQD 288
            L+LK VA  ++ AV E     R+  DEF  +       K    I + +L      ++  D
Sbjct: 1138 LLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDD 1197

Query: 289  RRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQI 348
            + L IS SIGI+ Y  +  + D L+  A  A+   K       +FY N L+    R  Q 
Sbjct: 1198 KSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQ- 1256

Query: 349  IEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAEQ 408
               L + L + I   EL +V QP       +    E L RW  S LG ++P EFI  AE+
Sbjct: 1257 ---LETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEE 1313

Query: 409  SGLIVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKAYGF 468
            +G+I + G  ++  +C    E  +     I +++N SA +L      +  +   +   G 
Sbjct: 1314 TGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLKAD--IISTIEVALAVSGL 1371

Query: 469  QADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCIKI 528
             A    +ELTE++++    E  +IL+ L+ LG  IA+DDFGTGYSSL+Y+  +PID +KI
Sbjct: 1372 PAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1431

Query: 529  DAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYYFS 588
            D  FVR++  +    +I   II LA+ L+L++VAEGVE Q+ L+ L   GC+Q+QG+  S
Sbjct: 1432 DREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLS 1491

Query: 589  RP 590
            +P
Sbjct: 1492 KP 1493