Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  213 bits (541), Expect = 4e-59
 Identities = 130/424 (30%), Positives = 221/424 (52%), Gaps = 14/424 (3%)

Query: 176  LRHEISHDNLTGLMNRNDLAEKLT---ALVQEDRHHFTLAFLDIDEFRSINDLHGHYLGD 232
            L ++   D LTGL NR    E+L     L Q D     +  +D+D+F+ IND+ GH  GD
Sbjct: 629  LWYQAHFDTLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKYINDVQGHATGD 688

Query: 233  LVLKFVADAIKQAVPEEGYAFRIAADEFAFL----TTDREPMKICQTILNKLAQDYIDQD 288
            L+L+ VA  ++    +     RI  DEF  +    T +     +   I+  L+  +   +
Sbjct: 689  LLLQDVAKRLENIAGKNDLIARIGGDEFVLILPRVTNEFAIEHMASRIIETLSTPFNLNE 748

Query: 289  RRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQI 348
            R ++IS S GI  Y  + L+   L  N  +A+ + K       +++ + ++   + R ++
Sbjct: 749  REIQISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMEL 808

Query: 349  IEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAEQ 408
             + LR    + + Q E  +  QPIV+         E L RW    LG++ P +FI  AE+
Sbjct: 809  EQRLR----RAVAQDEFTLHYQPIVEMKTGKVCSVEALIRWQDPDLGLIPPDQFIGIAEE 864

Query: 409  SGLIVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNR--YLEHLLKTIKAY 466
            +GLI   GE +L  A    ++ +Q +  ++ ++IN S+ +  ++    + + L +    +
Sbjct: 865  TGLIEPMGEWVLNQAMHDLRQWQQ-LGLQLNVAINVSSRQCVNARGMGFDQVLQECFNRH 923

Query: 467  GFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCI 526
                    IE+TE++L+  A+   S L  +R LG +I +DDFGTGYSSL+Y+  +PI  I
Sbjct: 924  HINPRNVHIEITESMLMGDASHCLSTLEAIRRLGSQIYIDDFGTGYSSLSYLKKFPISVI 983

Query: 527  KIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYY 586
            KID +FV N L+N ++ ++V  I+ +   L+++LVAEG+E +   + L  +GC   QGY 
Sbjct: 984  KIDRSFVENALSNNSNTNLVKAIVMMGQSLEMELVAEGIETEAQWNLLRDLGCHYAQGYL 1043

Query: 587  FSRP 590
             S+P
Sbjct: 1044 ISKP 1047