Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1228 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  212 bits (539), Expect = 9e-59
 Identities = 130/415 (31%), Positives = 220/415 (53%), Gaps = 11/415 (2%)

Query: 182  HDNLTGLMNRNDLAEKLTALVQE---DRHHFTLAFLDIDEFRSINDLHGHYLGDLVLKFV 238
            HD+LT L NR  L  +L  + QE    +    + F+D+D F++IND  GH++GD++L  V
Sbjct: 805  HDSLTLLPNRLSLQSRLEKVFQEAFISQTQIAVMFIDMDHFKNINDTLGHHVGDMLLLEV 864

Query: 239  ADAIKQAVPEEGYAFRIAADEFAFLTTDREP---MKICQTILNKLAQDYIDQDRRLKISV 295
            A  +K  +  +    R+  DEF  + +D +     K+ + + + L Q Y+  ++ L  S 
Sbjct: 865  ARRLKNIMGNDDIVARLGGDEFVVVLSDTDHDRVAKVAEALRSGLNQTYLIDNKPLHSSP 924

Query: 296  SIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQIIEALRSE 355
            SIGI+ +  +  + + L+ NA +A+   K       +F+   ++     R QI   LR  
Sbjct: 925  SIGISLFPTDGDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLVTERQQIETGLRQA 984

Query: 356  LSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAEQSGLIVEF 415
            ++      EL +  QP V          E L RW    LG+V P  FI  AE+  +I+  
Sbjct: 985  IAC----NELLLYYQPQVDISSGQVVGVEALIRWQHPELGLVAPDRFIPIAEEIDMIIPI 1040

Query: 416  GERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKAYGFQADEFTI 475
            G+ +LE A     E      + +R+++N SA +L   +  +  ++  +  +        +
Sbjct: 1041 GQWVLENALAQLAEWRDKGAKGLRMAVNLSAHQL-RKDTIVADIINVLTKHKLGKGALEL 1099

Query: 476  ELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCIKIDAAFVRN 535
            E+TE+V +    +   +L  LR+ G ++A+DDFGTGYSSL+Y+   P+D +K+D +FV++
Sbjct: 1100 EITESVAMQYPEQNAKLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1159

Query: 536  LLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYYFSRP 590
            + ++    +I    I +A++L L +VAEGVEN+  L  L  MGC+ +QGYYFS+P
Sbjct: 1160 IESDPNDAAISAATISMAHELGLTVVAEGVENEAQLVLLSGMGCDLVQGYYFSKP 1214