Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1505 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  238 bits (607), Expect = 1e-66
 Identities = 150/422 (35%), Positives = 226/422 (53%), Gaps = 13/422 (3%)

Query: 176  LRHEISHDNLTGLMNRNDLAEKLT-ALVQEDRHH--FTLAFLDIDEFRSINDLHGHYLGD 232
            LR   S D LTGL NR    ++L  A+ Q  R +    L FLD+D F+ IND  GH++GD
Sbjct: 1075 LRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGD 1134

Query: 233  LVLKFVADAIKQAVPEEGYAFRIAADEFAFLTTDREPMK----ICQTILNKLAQDYIDQD 288
            L+LK VA  ++ AV E     R+  DEF  +       K    I + +L      ++  D
Sbjct: 1135 LLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDD 1194

Query: 289  RRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQI 348
            + L IS SIGI+ Y  +  + D L+  A  A+   K       +FY N L+    R  Q+
Sbjct: 1195 KSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHVQL 1254

Query: 349  IEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAEQ 408
               L+  +S+     EL +V QP     + +    E L RW+ S LG ++P EFI  AE+
Sbjct: 1255 EAGLKQAISR----NELSLVYQPKFCLRKGSLTGLEALLRWHHSELGPISPAEFIPLAEE 1310

Query: 409  SGLIVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKAYGF 468
            +G+I + G  ++  AC    E  +     I +++N SA +L      +  +   +   G 
Sbjct: 1311 TGIINQIGHWVINHACQQLAEWNELGFGDISMAVNLSARQLKAD--IISTIEVALSVSGL 1368

Query: 469  QADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCIKI 528
             A    +ELTE++++    E  +IL+ L+ LG  IA+DDFGTGYSSL+Y+  +PID +KI
Sbjct: 1369 PAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1428

Query: 529  DAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYYFS 588
            D  FVR++  +    +I   II LA+ L+L++VAEGVE Q+ L+ L   GC+Q+QG+  S
Sbjct: 1429 DREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLS 1488

Query: 589  RP 590
            +P
Sbjct: 1489 KP 1490