Pairwise Alignments

Query, 607 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1009 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  219 bits (557), Expect = 6e-61
 Identities = 137/419 (32%), Positives = 215/419 (51%), Gaps = 11/419 (2%)

Query: 179 EISHDNLTGLMNRNDLAEKLTALVQE---DRHHFTLAFLDIDEFRSINDLHGHYLGDLVL 235
           + ++D LTGL NR  L E L A ++    +R+HF L FLD+D F+ +ND  GH +GDL+L
Sbjct: 580 QANYDTLTGLPNRRMLLEYLGAEIKSADRNRNHFALMFLDLDYFKEVNDTLGHAMGDLLL 639

Query: 236 KFVADAIKQAVPEEGYAFRIAADEFAFLTTDREPMK----ICQTILNKLAQDYIDQDRRL 291
              A  +K  V +     R+  DEF  + +     K    + + IL ++A+ Y+  +   
Sbjct: 640 IETASRLKSCVRDADVVARLGGDEFTVVLSSMVDHKGIERVAEHILRRIAEPYVLGEETA 699

Query: 292 KISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRTQIIEA 351
            IS SIGIT Y  +  + + LL +A  A+   K     R  ++   +      R ++I+ 
Sbjct: 700 YISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLIQD 759

Query: 352 LRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAAEQSGL 411
           LR    + +   E  +  QPIV          E L RW     G V+P EFI  AE +GL
Sbjct: 760 LR----QAVVSKEFELHYQPIVTMTTGEVLKAEALLRWFHPERGYVSPAEFIPVAEDTGL 815

Query: 412 IVEFGERILELACIAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKAYGFQAD 471
           IVE G  + E A        +     I++S+N S  +       L + L+ ++       
Sbjct: 816 IVEIGNWVFEQAARQSALWRKTFGVDIQISVNKSPIQFRDEGTLLHNWLELLQKLDVTGT 875

Query: 472 EFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDCIKIDAA 531
              +E+TE +LL  +  V   L   R+ G +++LDDFGTGYSSL Y+  + ID +KID +
Sbjct: 876 GVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQS 935

Query: 532 FVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGYYFSRP 590
           F RN+ T+++ +++   II +A++L + ++AEGVE +     L   GC+  QGY FS+P
Sbjct: 936 FTRNIDTDESDQTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLTAGCDYGQGYLFSKP 994