Pairwise Alignments

Query, 458 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., nucleoside recognition domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  616 bits (1588), Expect = 0.0
 Identities = 301/437 (68%), Positives = 369/437 (84%)

Query: 22  FLIPSLIGLFLFMAPISYDGSLTIPVAVLAKSVQALFGDTLVTVVTAIIAFMSVASVICK 81
           FL+PS+IGL LFM PISY  ++TIP+A+++K +Q L GD++V +VTAI+   ++A++ICK
Sbjct: 15  FLVPSIIGLLLFMTPISYQDAITIPIAIVSKGLQNLLGDSIVAIVTAIVVLTAIATLICK 74

Query: 82  VFKPSWVMSRPFLNSLFNPSWLWLTVRVIGGAAVIMTFFQIGPKAIWEENTGGLVLQGLL 141
             KP+ +   PF  +L + S +W  VRV+G   +++TF   GP+AI   NTG LVL  LL
Sbjct: 75  AAKPTILNRYPFFRALLDVSPMWALVRVLGAIFIVLTFTGTGPEAIHSGNTGALVLNDLL 134

Query: 142 PTLFSVFIFAGLLLPLLLNFGLLELFGSLLSKVMRPLFNLPGRSAIDCMASWLGDGSVGI 201
           P LF VFIFAG+LLPLLLNFGLLELFG+LL+KVMRP+FNLPGRSAIDCMASWLGDGSVGI
Sbjct: 135 PVLFCVFIFAGMLLPLLLNFGLLELFGTLLTKVMRPVFNLPGRSAIDCMASWLGDGSVGI 194

Query: 202 LLTSKQYEEKFYTQREAAVVGTTFSAVSITFSLVVIAQVELEHLFLPFYGAVCLAGLVAA 261
           L TSKQYE +FYTQREAAV+GTTFSAVSITFSLVVI+QV+LEHLF+PFY  VCLAG+VAA
Sbjct: 195 LKTSKQYESRFYTQREAAVIGTTFSAVSITFSLVVISQVKLEHLFVPFYLTVCLAGVVAA 254

Query: 262 VVIPRLPPLSWKKDTYIDGSKPHPDADAIPEGHSAFSWGMELALTKAAKVKSVQSVIGEG 321
           +V+P+LPPLSWKKD YID +  HPD + IP G   F+WG+E ALTKAAK +SV   + +G
Sbjct: 255 IVVPKLPPLSWKKDHYIDETPRHPDDEVIPHGKGVFAWGLEQALTKAAKAESVGHTLKDG 314

Query: 322 IRNAVDMVFGVLPVVMGLGTIALVIAEYTSVFSLLGQPFIPFLELLGVPEATAASKTIVV 381
           ++N +DM+FGV+PVVM +GT+AL+IAEYT +F+ LG PFIP LELL VPEA  ASKTIVV
Sbjct: 315 LKNVIDMIFGVIPVVMAIGTVALMIAEYTPIFNYLGMPFIPLLELLQVPEAAEASKTIVV 374

Query: 382 GFADMFIPAILAASIDNEMTRFVIAAMSVTQLIYMSEVGALLLGSRIPVNIVELFVIFIL 441
           GFADMFIP+ILA+SI+++MTRF+IAAMSVTQLIYMSEVGALL+GS+IPVNI+ELFVIFIL
Sbjct: 375 GFADMFIPSILASSIESDMTRFIIAAMSVTQLIYMSEVGALLIGSKIPVNILELFVIFIL 434

Query: 442 RTLITLPVIAAVAHLLF 458
           RTL+TLPVIA VAHL+F
Sbjct: 435 RTLVTLPVIAGVAHLIF 451