Pairwise Alignments

Query, 458 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  608 bits (1567), Expect = e-178
 Identities = 296/437 (67%), Positives = 367/437 (83%)

Query: 22  FLIPSLIGLFLFMAPISYDGSLTIPVAVLAKSVQALFGDTLVTVVTAIIAFMSVASVICK 81
           F++PSLIGL LF+ PISY+ ++TIP+A+++K++Q++  D L  +VT I+  M++ASV+ K
Sbjct: 16  FIVPSLIGLLLFVTPISYNDAITIPIAIISKALQSVLSDVLTLIVTVIVVSMALASVLTK 75

Query: 82  VFKPSWVMSRPFLNSLFNPSWLWLTVRVIGGAAVIMTFFQIGPKAIWEENTGGLVLQGLL 141
           + KP +V++  FLN L N S +WL  RV+G   +++T+F IGP  I   +TG LVL  LL
Sbjct: 76  LLKPKFVLNNHFLNGLLNISPMWLITRVVGAIFIVLTYFAIGPAVINSSSTGALVLNDLL 135

Query: 142 PTLFSVFIFAGLLLPLLLNFGLLELFGSLLSKVMRPLFNLPGRSAIDCMASWLGDGSVGI 201
           P LFSVFIFAG+LLPLLLNFGLLELFG+L++KVMRP+FNLPGRSAIDCMASWLGDGSVGI
Sbjct: 136 PVLFSVFIFAGMLLPLLLNFGLLELFGTLMTKVMRPVFNLPGRSAIDCMASWLGDGSVGI 195

Query: 202 LLTSKQYEEKFYTQREAAVVGTTFSAVSITFSLVVIAQVELEHLFLPFYGAVCLAGLVAA 261
           LLTSKQYE +FYTQREAAV+GTTFSAVSITF LVVI+QV+LE +F+PFY  VCLAG  AA
Sbjct: 196 LLTSKQYEARFYTQREAAVIGTTFSAVSITFCLVVISQVKLEPMFVPFYLTVCLAGFAAA 255

Query: 262 VVIPRLPPLSWKKDTYIDGSKPHPDADAIPEGHSAFSWGMELALTKAAKVKSVQSVIGEG 321
           V++P+LPPLSWKKD YID +   PD + IP G+ AFSWG + AL KAA    V++V+ EG
Sbjct: 256 VIVPKLPPLSWKKDNYIDDTPRQPDDEMIPAGYGAFSWGFDKALEKAASAGGVKAVLHEG 315

Query: 322 IRNAVDMVFGVLPVVMGLGTIALVIAEYTSVFSLLGQPFIPFLELLGVPEATAASKTIVV 381
           I+N +DMVFG++PVVM +GT AL+IAE+T +F+ LG PFIP LELL +PEAT ASKTIVV
Sbjct: 316 IKNVIDMVFGIIPVVMAIGTTALIIAEHTPIFNYLGMPFIPLLELLHIPEATEASKTIVV 375

Query: 382 GFADMFIPAILAASIDNEMTRFVIAAMSVTQLIYMSEVGALLLGSRIPVNIVELFVIFIL 441
           GFADMFIP+ILA+SI+++MTRFVIAA+SVTQLIYMSEVGALL+GS+IPVN VELFV+FIL
Sbjct: 376 GFADMFIPSILASSIESDMTRFVIAALSVTQLIYMSEVGALLIGSKIPVNFVELFVVFIL 435

Query: 442 RTLITLPVIAAVAHLLF 458
           RTL+TLPVIA VAHLLF
Sbjct: 436 RTLVTLPVIAGVAHLLF 452