Pairwise Alignments

Query, 366 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 11/180 (6%)

Query: 187 LLTFSCVGLVSFILHKEATHHRV--LALTDPLTGLENRTAMFAELE-----RHRRSGGFS 239
           LL + C  +   I  K+  H R+  +A  D LT + NR  +    +         SG  +
Sbjct: 264 LLQYVCAQITVAIERKQL-HARLQHMAQYDQLTQVPNRELLRERFKCALATARAASGRMA 322

Query: 240 LFLLDLNGFKQINDTYGHQMGDAVLKQVAYRLNNSIPSFDYRVFRMGGDEFAIILSSINS 299
           L  +DL+ FKQINDTYGH +GD +L+ VA RL   I   D  V R+GGDEF ++L SI +
Sbjct: 323 LLYIDLDRFKQINDTYGHGVGDMLLQAVANRLKGCIRDTD-TVARIGGDEFVVLLHSIQA 381

Query: 300 -TEQMMMQRMIKQCFDHEFELSGDLRAKLNTSVGVSTYPLDSTNLSQLIHLADKNMYEMK 358
             +   +Q  I+        L G     +  S+GV+ +P   T    L   AD+ MY  K
Sbjct: 382 LADAQRVQEKIRHALAQPLRLDGHC-LSIEPSIGVACFPDHGTEDVALFRHADEAMYAAK 440