Pairwise Alignments

Query, 366 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 701 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score = 95.9 bits (237), Expect = 3e-24
 Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 37/256 (14%)

Query: 131 LAAKNPESLQTFIVAAQQELEIFIQFIN------------RTFGMQSPLYVEQKEKLNYL 178
           L  K+P  LQ F  A+Q++++ F+Q +             R+ G Q P + +   KL   
Sbjct: 193 LLNKSPLDLQGFCEASQRQID-FLQSLEDRGSWQGETLKTRSDGSQFPAW-KSCRKLQID 250

Query: 179 SRIQFALILLTFSCVGLVSFILHKEATHHRVL--ALTDPLTGLENRTAMFAELER----H 232
             I +         V L S I  K+    R+   A+ D LTGL NR  +   L++     
Sbjct: 251 GEIFY---------VTLFSDISAKKRLESRLTEQAMVDTLTGLPNRHQLKLHLDQVLADA 301

Query: 233 RRSGGF--SLFLLDLNGFKQINDTYGHQMGDAVLKQVAYRLNNSIPSFDYRVFRMGGDEF 290
              GG   ++  +DLNGFK +ND +GH  GD VL+ VA RL  S    +  + R+GGDEF
Sbjct: 302 TEVGGKPGAVMFMDLNGFKNVNDCFGHATGDKVLQLVAARLEASCID-NAHIARLGGDEF 360

Query: 291 AIILSSINSTEQM-MMQRMIKQCFDHEFELSGDLRAKLNTSVGVSTYPLDSTNLSQLIHL 349
            ++LS    +E++  + + +   FD  FE++G  +  L TS+G++ +P  S   +QL+  
Sbjct: 361 TLVLSDCQDSEEIEAVSQQLLAIFDAPFEINGQ-KFFLGTSIGIACFPEHSDQAAQLLSF 419

Query: 350 ADKNMYEMKFLQKSPS 365
           AD  MY  K   KSP+
Sbjct: 420 ADTAMYCAK---KSPN 432