Pairwise Alignments

Query, 366 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 90.5 bits (223), Expect = 3e-22
 Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 6/170 (3%)

Query: 193  VGLVSFILHKEATHHRVLALT--DPLTGLENRTAMFAELERH-RRSGGFSLFLLDLNGFK 249
            VG+ S I  ++     +  LT  D LTGL NR+ +   L     +    +L +LDL+ FK
Sbjct: 970  VGVFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEINHALMVLDLDNFK 1029

Query: 250  QINDTYGHQMGDAVLKQVAYRLNNSIPSFDYRVFRMGGDEFAIILSSINS-TEQMMMQRM 308
            +IND+ GHQ+GD +LK V+ R+ +S+P  +  ++R+GGDEFAI+L   +       +   
Sbjct: 1030 RINDSLGHQVGDKLLKLVSVRIKSSVPK-NTNIYRLGGDEFAIVLDKTSDILASAAIAGR 1088

Query: 309  IKQCFDHEFELSGDLRAKLNTSVGVSTYPLDSTNLSQLIHLADKNMYEMK 358
            I   F+  +E+  + +  L  SVG+  YP D  N   L+  AD  MY  K
Sbjct: 1089 IVDAFNTVYEIDNE-QLVLGVSVGIVLYPDDEQNEQALLRKADIAMYHAK 1137