Pairwise Alignments

Query, 366 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 89.7 bits (221), Expect = 3e-22
 Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 12/175 (6%)

Query: 193 VGLVSFILHKEATHHRVL--ALTDPLTGLENRTAMFAELERH-----RRSGGFSLFLLDL 245
           V L S I  K+ + H +   A  D LTGL NR  +   L        R    F+L  LDL
Sbjct: 552 VALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDL 611

Query: 246 NGFKQINDTYGHQMGDAVLKQVAYRLNNSIPSFDYRVFRMGGDEFAIILSSINSTE--QM 303
           + FK++NDT GH MGD +L + A RL + +   D  V R+GGDEF ++LSS+   +  + 
Sbjct: 612 DYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADV-VARLGGDEFTVVLSSMADHKGIER 670

Query: 304 MMQRMIKQCFDHEFELSGDLRAKLNTSVGVSTYPLDSTNLSQLIHLADKNMYEMK 358
           + + ++++  +  +   G+    ++ S+G++ YP DS ++  L+  AD+ MY  K
Sbjct: 671 VAEHILRRIAEPYY--LGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAK 723