Pairwise Alignments

Query, 366 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (256), Expect = 4e-26
 Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 8/162 (4%)

Query: 208  RVLALTDPLTGLENRTAMFAEL-----ERHRRSGGFSLFLLDLNGFKQINDTYGHQMGDA 262
            R LA  D LTGL NRT     L     + HR +   +L  LDL+ FK IND+ GH +GD 
Sbjct: 1079 RFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDL 1138

Query: 263  VLKQVAYRLNNSIPSFDYRVFRMGGDEFAIILSSINSTE-QMMMQRMIKQCFDHEFELSG 321
            +LK VA+RL +++   D  V R+GGDEF IIL  +  T+   ++   + + F   F L  
Sbjct: 1139 LLKAVAHRLQSAVREGD-TVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPF-LLD 1196

Query: 322  DLRAKLNTSVGVSTYPLDSTNLSQLIHLADKNMYEMKFLQKS 363
            D    ++TS+G+S YP D+ ++  LI  AD  MY  K L ++
Sbjct: 1197 DKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRN 1238