Pairwise Alignments

Query, 547 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  241 bits (615), Expect = 6e-68
 Identities = 143/395 (36%), Positives = 232/395 (58%), Gaps = 3/395 (0%)

Query: 153 QATAEYRKVGNEMIKAIDVLSNRLNQVAMTTIDESEHEHDSVMSQSTFALIGILLVAALS 212
           QA A+ R+   +  K I  +S+ L Q  +  +D    +  S +  ST      L++  L+
Sbjct: 249 QAIAKARQEMTDQQKEIVRISDSLYQFQLDRLDVESSDARSRLIVSTLLA---LVLGVLA 305

Query: 213 SWLLAGIIVTPIRQLQQTVREIAKGNLLVKAQEEGNNEITLLARDVNATVTQLRQTVESL 272
           +WL+   I+ P+R     V  IA G+L   AQ +  +E+ +L R +    + LR+ +  +
Sbjct: 306 AWLITRQIILPLRTTMADVERIASGDLSETAQIQRRDELGVLQRGIQQMGSTLRELIGGI 365

Query: 273 VRISTDVASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADGAA 332
               + +++A+ EL+ V  Q S   + +K+E +QVA+A++++ +T Q V  +A  A  AA
Sbjct: 366 RDGVSQISAAAEELSAVTQQTSAGVNSQKEETDQVATAMHEMSATVQEVARNAEQAALAA 425

Query: 333 QQANQLASQSLRMFEESHRATAKMADQLREAAQVVNQLKEQSERIGNVTEVIRSISEQTN 392
            +A+  A +  R+  E      +MA  +  + + +  L+E+S++IG+V  VIR+++EQTN
Sbjct: 426 TEADSEAREGDRVVTEVVTQIERMASAVVRSTEAMTALQEESDKIGSVMNVIRAVAEQTN 485

Query: 393 LLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIEELQNQSNTANSSMH 452
           LLALNAAIEAARAGE+GRGFAVVADEVR LA RTQ ST+EI+ ++  LQN +    S MH
Sbjct: 486 LLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAALQNGTQQVASIMH 545

Query: 453 SSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVATASEEQSQVTKDINRNLSNIYE 512
           +S  L +    LA +  ASL  I  ++S +  +N Q+A A+EEQS V ++I+R++ N+ +
Sbjct: 546 TSRDLTDSGVELARRAGASLGSITRTVSNIQAMNQQIAAAAEEQSAVAEEISRSVVNVRD 605

Query: 513 LVSQNVTGITQSAAASHELSDLAEQQHQQLQYFRV 547
           +  Q      ++AA+S EL+ L  Q    +  FR+
Sbjct: 606 VSEQTAAASEETAASSTELARLGGQLQMMVSRFRL 640



 Score = 29.3 bits (64), Expect = 5e-04
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 437 IEELQNQSNTANSSMHSSLSLLEQNQSLAAK-VSASLTEINHSISALGQINAQVATASEE 495
           ++ +  Q +TA +++      L+ N   A + +   L E   +I AL      +A A +E
Sbjct: 198 VKAIYTQLDTAQATLGRHAGALDANSGAALQQIRTVLDEYRSAIQALETATQAIAKARQE 257

Query: 496 QSQVTKDINRNLSNIYE 512
            +   K+I R   ++Y+
Sbjct: 258 MTDQQKEIVRISDSLYQ 274