Pairwise Alignments

Query, 547 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  214 bits (544), Expect = 9e-60
 Identities = 168/518 (32%), Positives = 272/518 (52%), Gaps = 36/518 (6%)

Query: 57  LTTLIDNTYAMRISAIYSLFRPAEVTALPNVLKEKQTENLALLRSLADNP--ELKNEV-- 112
           L++ +DN +    +++ S+ +  EVTA  +V+ + + +   LL ++A N    +K+++  
Sbjct: 38  LSSSLDNVFT---NSLLSVTKSGEVTA--SVIAQNR-DLYRLLAAMAGNAPQSVKDDILA 91

Query: 113 ---AGLTQAMQRYVDYSIQTMIPLLNIEHSDQEKDERFTAQYEQATAEYRKV-------G 162
              A  TQA + Y  Y      PL + E +  ++ +R    Y+    + + V       G
Sbjct: 92  SMSANKTQAEKSYATYRAT---PLDDDERAAGDQMDRDWPGYQALIEQAKSVALSGDIAG 148

Query: 163 NEMIKAIDVLSNRLNQV-AMTTIDESEHEHD---SVMSQST--------FALIGILLVAA 210
              I   DV S  L  +  +TTI  S +      +V S  T        +  IG+   AA
Sbjct: 149 ARAIIDGDVRSGYLKVMDQLTTIVNSNNRQAGEAAVASDQTQNSAQRNLYIGIGLSFFAA 208

Query: 211 LSSWL-LAGIIVTPIRQLQQTVREIAKGNLLVKAQEEGNNEITLLARDVNATVTQLRQTV 269
               L ++  I TPI       R IA G+L +    + ++E  ++   ++     L+ T+
Sbjct: 209 FVMGLFISRAISTPINTAVTNARRIASGDLTLPIASQYHDEAGMMLVALSDMQDNLKSTI 268

Query: 270 ESLVRISTDVASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSAD 329
             +   +  +ASA+ EL  V  ++S    ++  E++Q ASAVN++ +  + V  +A S  
Sbjct: 269 GQISSAADQLASAAEELNAVTEESSRGLIRQNDEIQQAASAVNEMTAAVEEVARNAMSTS 328

Query: 330 GAAQQANQLASQSLRMFEESHRATAKMADQLREAAQVVNQLKEQSERIGNVTEVIRSISE 389
            A++Q +  A+       ++  A   ++ ++  +  +V +L  +   IG V +VIR I+E
Sbjct: 329 EASRQTSTDAAAGRDQARDAVNAINTVSAEISSSTTMVEELAGRVREIGQVLDVIRGIAE 388

Query: 390 QTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIEELQNQSNTANS 449
           QTNLLALNAAIEAARAGE GRGFAVVADEVR LAARTQ ST EI+ +I  +Q  ++ A  
Sbjct: 389 QTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTGEIETMIGSVQASADQAVR 448

Query: 450 SMHSSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVATASEEQSQVTKDINRNLSN 509
           +M +S +L    Q+LA     SL  I  S++ +   N  +ATASEEQS V ++++RNL N
Sbjct: 449 AMANSRTLTSNTQTLAQATGQSLERIAQSVAEINDRNMLIATASEEQSHVAREVDRNLVN 508

Query: 510 IYELVSQNVTGITQSAAASHELSDLAEQQHQQLQYFRV 547
           I +L +Q   G  Q++A+S ELS LA   +  +  F+V
Sbjct: 509 IQDLSAQTAAGAHQTSASSQELSRLAISFNNLVGKFKV 546