Pairwise Alignments

Query, 547 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  213 bits (543), Expect = 1e-59
 Identities = 154/557 (27%), Positives = 298/557 (53%), Gaps = 34/557 (6%)

Query: 5   LSGLSIKLQVVVPVFFTLLLLII--GITFSTSSLKTAFHQVTVSTEQLITDKDNLTTLID 62
           ++ L IK ++++  F  +LLLII  G++ S  S K     + +  ++++  +D    LI 
Sbjct: 1   MNQLQIKHKMLLGFFIPVLLLIIVCGVSMSIMS-KIEDGVLRIYNDRVVPLED--LKLIG 57

Query: 63  NTYAMRISAIYSLFRPAEVTA--LPNVLKEKQTENLALLRSLADNPEL---KNEVAGLTQ 117
           + YA+ +    +       +A    N L E + +N+A       + EL   + ++A  TQ
Sbjct: 58  DDYAVSVIDAINKANAGGFSAEEARNGLIEAK-KNIASRWDKYMSTELTADEQKLASQTQ 116

Query: 118 AMQRYVDYSIQTMIPLLNIEHSDQEKDERFTAQYEQATAEYRKVGNEMIKAIDVLSNRLN 177
            +    +  IQ +I             ++ + +    T ++      + + ID +S ++ 
Sbjct: 117 QLFAPANQQIQLLI-------------DKLSGKSGSVTGQFSADIIPLYQVIDPISGKVA 163

Query: 178 QVAMTTIDESEHEHDSVMSQST--------FALIGILLVAALSSWLLAGIIVTPIRQLQQ 229
           ++    I  ++ E + V +  +         A+  +L+ +    W+  G++ TP+ +++Q
Sbjct: 164 ELVTLQIHIADLEREQVETLHSSSLKWFIGLAVFAVLITSFFGVWVNRGVM-TPVTEIRQ 222

Query: 230 TVREIA-KGNLLVKAQEEGNNEITLLARDVNATVTQLRQTVESLVRISTDVASASTELAT 288
            +R+I  K ++ V      ++E+  +A+D+N  V  L+  ++++   ++ +  ++ EL  
Sbjct: 223 KLRQIREKSDMTVSFTVFRDDELGHIAKDLNGVVNHLKGILKNIAEAASTLGDSADELNE 282

Query: 289 VMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQLASQSLRMFEE 348
              QA+    +++ E EQ A+A+N++ +    V   ++SA  +A+ A++ A++   + ++
Sbjct: 283 FTRQANDRMFKQQSETEQTATAMNEMTAAVAEVAQSSNSAAESARNADESAARGNSIVQQ 342

Query: 349 SHRATAKMADQLREAAQVVNQLKEQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGES 408
           S  + + +A Q++  A V+ +L  +S+ IG V +VI+SI+EQTNLLALNAAIEAARAGE 
Sbjct: 343 SISSMSVLASQIQGTAAVIGELATESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQ 402

Query: 409 GRGFAVVADEVRMLAARTQTSTQEIQAIIEELQNQSNTANSSMHSSLSLLEQNQSLAAKV 468
           GRGFAVVADEVR LA RT  ST+EI+++IE LQ    +A +SM   ++ ++         
Sbjct: 403 GRGFAVVADEVRTLAQRTSESTREIESMIESLQQGVKSAVNSMEQGIAQVDNANESTNAA 462

Query: 469 SASLTEINHSISALGQINAQVATASEEQSQVTKDINRNLSNIYELVSQNVTGITQSAAAS 528
            ++L +I  S+ ++ Q+N  +ATA++EQS V + IN+++  I ++  ++       + A 
Sbjct: 463 GSALQDIVASVDSITQLNTHIATAADEQSCVAESINQSIIAISDIAQESTQAANDLSEAV 522

Query: 529 HELSDLAEQQHQQLQYF 545
           H+L+ LA     Q+  F
Sbjct: 523 HQLAQLAGHMRTQVGTF 539