Pairwise Alignments

Query, 547 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  228 bits (581), Expect = 6e-64
 Identities = 161/525 (30%), Positives = 275/525 (52%), Gaps = 37/525 (7%)

Query: 43  VTVSTEQLITDKDNLTTL--IDNTYAMRISAIYSLFRPAEVTALPNVLKEKQTENLALLR 100
           + + T Q  T+++   T   IDN+++  I++ Y L    E +    +LKE     L  + 
Sbjct: 167 IDLETSQDPTEREIAATASNIDNSFSNLITSSYDLVNAKEKSKYETILKE-----LDYII 221

Query: 101 SLADNP---ELKNEVAGLTQAMQRYVDYSIQTMIPLLN-----IEHSDQEKDERFTAQY- 151
           S A N      ++    + Q     ++     +  +LN     ++   Q+ D    A   
Sbjct: 222 SEAQNKLEYVSRHWEGVIDQEALDNINTEASKVFTMLNGPDSILKRKGQQLDFNLQASQL 281

Query: 152 -----EQATAEYRKVGNEMIKAIDVLSNRLNQVAMTTIDESEHEHDSVMSQSTFALIGIL 206
                  ATA  + +G+ + KAI+  S  ++  A+  ID +        S  T AL+ I 
Sbjct: 282 LNTVESNATAVNQSMGS-LNKAIESTSQAVSVKAIDEIDSA--------SYKTLALVLIA 332

Query: 207 LVAALSSWLLAGIIVTPIR----QLQQTVREIAKGNLLVKAQEEGNNEITLLARDVNATV 262
           +V A+   L++  ++ P++    ++   +  +A GNL  K  + G++E   L+R+ N  V
Sbjct: 333 IVVAV---LVSIAVIRPLKNSLDKVNNALNILASGNLTHKLDDSGHDEFAELSRNCNRLV 389

Query: 263 TQLRQTVESLVRISTDVASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVT 322
             LR  ++ ++  S  +A+A+ E + +  Q +    ++K +V+QVA+A  QL S+A  V+
Sbjct: 390 DSLRTLIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQVS 449

Query: 323 DHAHSADGAAQQANQLASQSLRMFEESHRATAKMADQLREAAQVVNQLKEQSERIGNVTE 382
             A  A    +QA++ A     + +E+ R    +AD++ +A QV+N++   S  IG++ +
Sbjct: 450 TSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVINKVHSDSASIGSILD 509

Query: 383 VIRSISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIEELQN 442
           VIR I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA+RTQ STQEIQ +I+ LQ 
Sbjct: 510 VIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQVLQQ 569

Query: 443 QSNTANSSMHSSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVATASEEQSQVTKD 502
            +  A S M               + + +L  I++++         +A A++EQ+ V++ 
Sbjct: 570 GTQEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGTHIANAAQEQNLVSQQ 629

Query: 503 INRNLSNIYELVSQNVTGITQSAAASHELSDLAEQQHQQLQYFRV 547
           ++  L +I  +  +  TG  Q+A +SH+++ LAE+    +  F+V
Sbjct: 630 VSEKLEHIAAISEETATGADQTAQSSHQVAQLAEELQASVGEFKV 674