Pairwise Alignments

Query, 547 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  229 bits (584), Expect = 2e-64
 Identities = 172/565 (30%), Positives = 275/565 (48%), Gaps = 57/565 (10%)

Query: 13  QVVVPVFFTLLLLIIGIT-FSTSSLKTAFHQVTVSTEQLITDKDNLTTLIDNTYAMRISA 71
           Q ++ VFF L LL++G+  FS   L       T  TE LI         I ++  M I+ 
Sbjct: 9   QRLISVFFILSLLVLGVAWFSVVQLAGLHSNTTKITENLIPS-------IRSSAQMHIAL 61

Query: 72  IYSLFRPAEVTALPNVLKEKQTENLALLRSLADNPELKNEVAGLTQAMQRYVDYSIQTMI 131
           + +  R  E+  + +V+       + + +   +  + + E      A   +V        
Sbjct: 62  LDA--RRNELNMVIDVMTHDSAA-IEISKQRFETAKSEFEAGAQQYAKLNFVS------- 111

Query: 132 PLLNIEHSDQEKDERFTAQYEQATAEYRKVGNEMIKAID------------VLSNRLNQV 179
                     E+DE+   +  +A  +Y    + ++ AID             L+ +  +V
Sbjct: 112 ----------EQDEQLFIKLGEAAEKYFSAHSSLVSAIDQGDMASANIMIKTLTRQTLEV 161

Query: 180 AMTTIDESEHEHDSVMSQ---------STFALIGILL------VAALSSWLLAGIIVTPI 224
           A        HE+D    +          T  ++ I++         + ++LL   I  PI
Sbjct: 162 AGEETMNLRHENDRAAQEMVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPI 221

Query: 225 RQLQQTVREIAKGNLLVKAQEEG--NNEITLLARDVNATVTQLRQTVESLVRISTDVASA 282
             L +   E++ GNL  K        +E   LA   N     L   V  +      ++SA
Sbjct: 222 MWLLKQTHEVSAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSA 281

Query: 283 STELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQLASQS 342
           + E+++V   +S N + ++ E+ Q+A+A++++Q+T Q V  + + A  AA QA+  A+Q 
Sbjct: 282 AEEISSVALHSSNNMETQQNELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQG 341

Query: 343 LRMFEESHRATAKMADQLREAAQVVNQLKEQSERIGNVTEVIRSISEQTNLLALNAAIEA 402
                +S     K+A  +   A V+ +L + S  IG V EVI+ I+EQTNLLALNAAIEA
Sbjct: 342 SETVNDSIVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEA 401

Query: 403 ARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIEELQNQSNTANSSMHSSLSLLEQNQ 462
           ARAGE GRGFAVVADEVR LA RTQ ST  I +II ELQ ++N A  +M  S  ++ +  
Sbjct: 402 ARAGEQGRGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETV 461

Query: 463 SLAAKVSASLTEINHSISALGQINAQVATASEEQSQVTKDINRNLSNIYELVSQNVTGIT 522
             A +   S+ +I+ S+S + Q+N Q+ATA+EEQ  V++++NRN++NI        TG  
Sbjct: 462 CKAREAGESIAKISSSVSCISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAK 521

Query: 523 QSAAASHELSDLAEQQHQQLQYFRV 547
           Q A A ++LS LA Q    ++ F +
Sbjct: 522 QMAMACNDLSHLATQLQDMVKKFHI 546