Pairwise Alignments

Query, 547 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  218 bits (556), Expect = 4e-61
 Identities = 128/388 (32%), Positives = 222/388 (57%), Gaps = 15/388 (3%)

Query: 164 EMIKAIDVLSNRLNQVAMTTIDESEHEHDSVMSQSTFALIGILLVAALSSWLLAGIIVTP 223
           E+   I+ ++ +++Q  +T ID +           +F  + ++L+A + + +++  +VTP
Sbjct: 297 EVSDNIEAVAAQMSQATITQIDAA-----------SFRTMIVVLIAIVVAIIISFAVVTP 345

Query: 224 IR----QLQQTVREIAKGNLLVKAQEEGNNEITLLARDVNATVTQLRQTVESLVRISTDV 279
           ++    Q+   +  +A GNL  K  +   +E   LA++ N  V  LR  +  ++  S  +
Sbjct: 346 LKRSLNQVNNALNVLASGNLTHKLDDSSQDEFAELAKNCNRLVDSLRGLIAGILDRSNQL 405

Query: 280 ASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQLA 339
           A+A+ + + +  Q +    ++K +V+QVA+A  +L S+AQ V+  A+ A    +QA+Q A
Sbjct: 406 AAAAEQTSAITAQTTTGIQEQKSQVDQVATATTELSSSAQQVSMSANDALAQIKQADQEA 465

Query: 340 SQSLRMFEESHRATAKMADQLREAAQVVNQLKEQSERIGNVTEVIRSISEQTNLLALNAA 399
                + EE+      +A+++ +A QV+N++   S  IG++ +VIR I+EQTNLLALNAA
Sbjct: 466 KHMRAIAEENKHTILALAEEVAKAGQVINKVHSDSAAIGSILDVIRGIAEQTNLLALNAA 525

Query: 400 IEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIEELQNQSNTANSSMHSSLSLLE 459
           IEAARAGE GRGFAVVADEVR LA+RTQ ST+EIQ +IE LQ  +  A ++M    +   
Sbjct: 526 IEAARAGEQGRGFAVVADEVRSLASRTQVSTREIQQMIEVLQQGAQQAVAAMDMGRAQAN 585

Query: 460 QNQSLAAKVSASLTEINHSISALGQINAQVATASEEQSQVTKDINRNLSNIYELVSQNVT 519
                  + + +L  I+ S+         +A A++EQ+ V++ ++  L +I  +  +   
Sbjct: 586 ACVQKTEQANLALETISQSVHKAYDAGTHIAHAAQEQNLVSQQVSEKLEHIAAISEETAI 645

Query: 520 GITQSAAASHELSDLAEQQHQQLQYFRV 547
           G  Q+A +SH+++ LAE+    +  FRV
Sbjct: 646 GADQTAQSSHQVAKLAEELQASVGEFRV 673