Pairwise Alignments

Query, 547 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  211 bits (538), Expect = 4e-59
 Identities = 169/560 (30%), Positives = 288/560 (51%), Gaps = 66/560 (11%)

Query: 12  LQVVVPVFFTLLLLIIGITFSTSSLKTAFHQVTVSTEQLITDKDNLTTLIDNTYAMRISA 71
           L  +  VF ++LL+IIGI     S    F ++  ++ +L+ +     T +  T+     A
Sbjct: 10  LTALPSVFASILLIIIGI-----SSYRGFAELNNTSSRLVNN-----TKLAETFTNVREA 59

Query: 72  IYSLFRPAEVTALPNVLKEKQTENLALLRSLAD-NPELKNEVAGLTQAMQRYVDYSIQTM 130
            + L R A +    + +  +Q     L+  LA+ N +   + A            +I+T+
Sbjct: 60  FFEL-RLATLVHNSDAISLQQRNVRQLVEQLAEFNTDFMGQDAR-----------TIRTL 107

Query: 131 IPLLNIEHSDQEKDERFTAQYEQATAEYRKVGNEMIKAID------VLSNRLNQVAMTTI 184
           +P +          E++   Y+Q  A  ++ G E     +       +SN +NQ+ +  I
Sbjct: 108 LPQI----------EQYVRLYQQELAFAKQTGTEPELTSERGALGPKVSNEINQL-VKLI 156

Query: 185 DESEHE----HDSVMSQSTFALIGILLVAALSSWLLAGI----IVTPIRQLQQTVREIAK 236
            +  HE     +  ++ +   L+G++LVA ++S L A      +V  + Q+++ V  +A 
Sbjct: 157 TQRNHELGKQAEDKVNATEALLLGLILVAIVASLLSALFMSRRLVNIVHQIKRVVEHLAD 216

Query: 237 GNLLVKAQEEGNNEITLLARDVNATVTQLRQTVESLVRISTDVASASTELATVMTQASVN 296
           G+L  K Q  G NE+  L  D++  +  LR  +       +D+A AS  ++  + Q +V 
Sbjct: 217 GDLTQKTQISGQNELCALGADLDRVIDHLRHMI-------SDIAQASEHMSDQIGQLNVQ 269

Query: 297 SDQEKQ-------EVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQLASQSLRMFEES 349
           S+           E +QV +A+ ++ +TA +V   A SA    QQAN+ A +S +  E++
Sbjct: 270 SNANTHALQTHAVETDQVVTAMTEMSATAHNVAGDAASAARFTQQANEQADKSKKAVEQA 329

Query: 350 HRATAKMADQLREAAQVVNQLKEQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGESG 409
                 +  ++  AA  + ++ E +  I  + +VI  I++QTNLLALNAAIEAARAGE G
Sbjct: 330 ANTVVALVGKVDTAAHTIAEMNENTRHIATILDVIGDIADQTNLLALNAAIEAARAGEQG 389

Query: 410 RGFAVVADEVRMLAARTQTSTQEIQAIIEELQNQSNTANSSMHSSLSLLEQNQSLAAKVS 469
           RGFAVVADEVR LAARTQ ST EI  ++E L+  +N+A ++M  +    +        V+
Sbjct: 390 RGFAVVADEVRALAARTQASTAEINQMLERLRTGANSAVNAMDETKQSCQDAADTTTLVT 449

Query: 470 ASLTEINHSISALGQINAQVATASEEQSQVTKDINRNLSNIYELVSQ-NVTG-ITQSAAA 527
            SL  +   +  +  ++ Q+ATA+EEQS V+++INRNL+ I E+V + N +G  T ++A 
Sbjct: 450 ESLETLTTYVFDINGLSNQIATAAEEQSAVSEEINRNLNTIREMVEELNQSGKATLNSAT 509

Query: 528 SHELSDLAEQQHQQLQYFRV 547
           S  L+   EQ    + +FR+
Sbjct: 510 S--LAATKEQLTGVVSHFRL 527