Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 655 a.a., TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins from Pseudomonas fluorescens FW300-N2E2

 Score = 93.6 bits (231), Expect = 3e-23
 Identities = 149/698 (21%), Positives = 281/698 (40%), Gaps = 97/698 (13%)

Query: 3   LSPVSAAVLSVLAAGFAH-----AETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETL 57
           LSP +   L+  AAG        AE +    ++VVVTA+  EQ + +   SV V++GETL
Sbjct: 10  LSPWTRFALAASAAGTLFTSAQAAEPQALTLDDVVVTASGYEQRVEDAPASVTVIDGETL 69

Query: 58  EKQGKTELYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADIND 117
            ++   +L DA+    GV+V GGA    +I+IRGM  +   I+ DG + +      + N 
Sbjct: 70  RRKSYRDLGDAVRDVEGVTVNGGANE-TDISIRGMPADYTLILVDGKRQSARESRVNGNS 128

Query: 118 KYGRNTF-SLSNVKQIQVVKGASSTLYGSGAIGGV--VIIESKAPEDYLYHRDYYVDAAL 174
            Y ++     + +++I+VV+G  S+LYGS AIGGV  VI    +P+       +    + 
Sbjct: 129 GYEQSFVPPAAAIERIEVVRGPMSSLYGSDAIGGVINVITRKVSPQ-------WGGSVSY 181

Query: 175 TYSGISNRYQGNHALAMRHGDG---EALLTIDYWQGEETRNFNQDLYNREVDGYNLGFSH 231
            YS   +  QGN      + +G   E  L +  W     R  + D+   + +G++   + 
Sbjct: 182 DYSARQHSDQGNARQTQFYLNGPLHEDFLGLQVWGRYLDRQADDDI--EQTNGFSQ--AD 237

Query: 232 HYWLNDALRLKTHLEY---FDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQTRLASVGAD 288
           H  L   L     +++    +  A R +   SI  +  W            TR      D
Sbjct: 238 HRDLTARLAFTPTVDHDILLEAGATRLKNGDSISAN--W-----------ATREQENNRD 284

Query: 289 YTANLSWMDTLEGKFYWRSTENITQTNRLMANDRSG----AGILSYRRELRDEGFNDEAL 344
           +     W  + +G++ W +T +I  +    + +         I   + E+++  F+ + +
Sbjct: 285 H-----WSLSHQGRWGW-ATSDIALSQETSSREGKATPAQTDIYGRKPEVKNTVFDAKLV 338

Query: 345 GATLNAQKEWQQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREYRF 404
             T                 + +S  G  +   +     +  GD  + D  F+  ++   
Sbjct: 339 VPT----------------THNVSTVGMQWNESELTDWNQGLGD--RVDYEFSVLQK--- 377

Query: 405 GVYGQDNLLLGD-WTLAAGLRF-DAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWH 462
            V+ ++   + D + L  GLR  D ++     + RI+G   V   +  W+    I+    
Sbjct: 378 AVFAENEWSVTDSFALTTGLRLDDHEQYGTHASPRIYG---VWRATDNWTLKGGIA---- 430

Query: 463 PEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYDN- 521
                      GF+AP         D++++    F++  N  L+ ETS ++E  + + N 
Sbjct: 431 ----------RGFKAPELRAV--VKDYAYLRRNRFVMLGNPDLKPETSTNYEFSALWSNR 478

Query: 522 GQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDRWS 581
                   VFY+ F + +       +   G ++    NI      G E++    ++    
Sbjct: 479 DDLSAGATVFYNDFKDKLSTVTTD-ERWNGYIVMDRVNIDKAVIQGVELTGQWDINASVL 537

Query: 582 VENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWASAMSRVPTCTTEQG 641
           ++    Y D +            L    + N + E W    R   A A + V     E G
Sbjct: 538 LKANYTYTDSEQKSGANAGAPLALTPKQKANLRGE-WAINDR---AQAWASVSYYGEETG 593

Query: 642 KETECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDR 679
                 +  G+ + D+G +Y+    ++ + ++ N+ ++
Sbjct: 594 NTITDESAPGYTTADLGGSYELTDSITLNSSLNNITNK 631