Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 840 a.a., TonB-dependent hemin , ferrichrome receptor from Pseudomonas fluorescens FW300-N2E2

 Score = 90.9 bits (224), Expect = 2e-22
 Identities = 91/354 (25%), Positives = 147/354 (41%), Gaps = 40/354 (11%)

Query: 385 SSGDDLQADEPFAPAREYRFGVYGQDNLLLGDWTLAAGLRFDAQKLSPKNTDRIHGYKVV 444
           S+ D L     F       + ++ QD +    WT   GLR+D  +L P  T+        
Sbjct: 492 STRDVLAKASDFPDPTINSYALFVQDQISWDKWTFTPGLRYDYTQLKPHLTEEFLNTVDP 551

Query: 445 TMG------SSEW---SPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLT 495
           T G      +  W   SP   ++Y    ++  Y  Y  GFR P+    YG  D+   P  
Sbjct: 552 TSGGEVSDKNKTWHRVSPKFGVTYALTDQYTWYGQYAEGFRTPTAKALYGRFDN---PGA 608

Query: 496 PFIIKPNNKLRAETSDSFELG--SKYDNGQTQFYVAVFYSIFDNFI--DVKQVGYDNATG 551
            + ++PN  L AE S  +E G   ++D+G   F VAVFY+ + +FI  D    G D  T 
Sbjct: 609 GYSVEPNADLEAEKSQGYETGLRGRFDSGS--FDVAVFYNKYRDFINEDAITPGADQLT- 665

Query: 552 SVIQQYQNIAGVKTYGAEMSVMHRLD-----DRWSVENKLGYVDGKDGE-NQYVRTLTPL 605
               Q  NI      GAE+     LD     +    +  + Y  G++ +  + + ++ PL
Sbjct: 666 ---FQSNNIKHATIKGAEIKGRLDLDVLGAPNGLYTQGSVAYAYGRNNDTGEPLNSVNPL 722

Query: 606 EGSVQLNYQRERWDAYSRLNWASAMSRV--PTCTTEQGKETECATTTGWVSWDIGLNYQW 663
            G   L Y ++R+             RV      +  G  ++   T G+   D+   Y+ 
Sbjct: 723 TGVFGLGYDQDRYGTLLSWTLVKKKDRVDDSNFNSPDGVSSQ-FKTPGFGILDLSGFYKV 781

Query: 664 NAQLSASFNVVNLLDREYTRYQDVAG---------VTPSDTLYSTEPGRYFTVH 708
              ++ S  + NL D++Y  + DV G         ++P++    T PGR F V+
Sbjct: 782 TDDVTVSGGLYNLTDKKYWLWDDVRGYDSVGEAAVLSPANLDRLTAPGRNFAVN 835



 Score = 84.7 bits (208), Expect = 2e-20
 Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 12/192 (6%)

Query: 29  EEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEPGVSVTGGAGRPQNIT 88
           ++V ++A R EQ ++ V  +V V + + L++     L D +  EPGVSV GGAG+   I+
Sbjct: 106 QQVTISATRQEQDITSVPSTVTVHDRQELDRNNVNTLKDLVRYEPGVSV-GGAGQRGGIS 164

Query: 89  ---IRGMTGNRIAIVRDGIQSADGYGAADINDKYG---RNTFSLSNVKQIQVVKGASSTL 142
              IRG+ GNRI    DG++   G+     N  Y    RN      +K+ ++++G +S L
Sbjct: 165 GYNIRGIDGNRILTQVDGVEIPGGF----FNGPYAKTQRNYVDPEIIKRAEILRGPASVL 220

Query: 143 YGSGAIGGVVIIESKAPEDYLY-HRDYYVDAALTYSGISNRYQGNHALAMRHGDGEALLT 201
           YGS AIGG V   +  P D +    D        YS     +  +  +A R G  + LL 
Sbjct: 221 YGSNAIGGAVSYFTLDPNDIIKPGEDVGARLKTGYSSADESWLKSATVAGRSGQFDGLLH 280

Query: 202 IDYWQGEETRNF 213
                G ET ++
Sbjct: 281 YSQRDGHETESY 292