Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., Outer membrane receptor proteins, mostly Fe transport from Pseudomonas stutzeri RCH2

 Score = 93.6 bits (231), Expect = 3e-23
 Identities = 148/613 (24%), Positives = 247/613 (40%), Gaps = 104/613 (16%)

Query: 1   MKLSPVSAAV-LSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEK 59
           +K  P++ ++ L+++ A +A    EP   + VVV+A+ + +   E+    AV+EG+ L  
Sbjct: 3   LKRHPLAWSISLALVPAAWA---AEPVELQSVVVSASGLAKQSHEMTTPAAVMEGDELVL 59

Query: 60  QGKTELYDALNQEPGV---SVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADIN 116
           + +  L + L   PGV   S   GA RP    IRG+ G R+ ++ DG++  D   A+ I+
Sbjct: 60  RREATLGETLETVPGVRSSSFGAGAARP---VIRGLDGARVKVLSDGVELLD---ASTIS 113

Query: 117 DKYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTY 176
             +   +  L   ++I+V+KG ++ LYG GAIGGVV +  K     +  + Y  +  L  
Sbjct: 114 PDHAVTSEPLL-AERIEVLKGPATLLYGGGAIGGVVNVIDKKIPTRVPEKGYEGELELRA 172

Query: 177 SGISNRYQGNHALAMRHGDGEALL-------TIDYWQGEETRNFNQDLYNREVDGYNLGF 229
           + ++N  +G     +  G G   +         D ++   + N  +  YN + D +NLG 
Sbjct: 173 NSVAN--EGAGVFGITAGSGNFAVRAEGTKRQADPYEIPGSSNKQEGSYN-DTDSFNLGA 229

Query: 230 S----------------HHYWLNDALRLKTHLEYFDDYAKRREGTSSIQKDDKWDLVSFY 273
           S                + Y L      + HL+    +    +       D++   V + 
Sbjct: 230 SFIGERGYIGMAYGEQNNRYGLLGHEHAECHLDGIQWHCGEHDDEDEDDHDEEGGGVPYV 289

Query: 274 EYQRSQTRLASVGADYTANLSWMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRE 333
           + ++ +        D    LS  D L G                    R   G   Y+ +
Sbjct: 290 DMRQKRW-------DLRGELS--DPLPG----------------FELARLRIGHSDYQHK 324

Query: 334 LRDEG-----FNDEALGATLNAQKEWQQGEWLHQFAYG-MSVDGHDYQRPKSIRRMESSG 387
             + G     FN++A  A L         E  HQ  +G   V G    R    R  E+ G
Sbjct: 325 EIEGGEVGTRFNNDATDARL---------ELTHQPLFGWRGVLGAQTLR----RDFEALG 371

Query: 388 DDLQADEPFAPAREYR-FGVYGQDNLLLGDWTLAAGLRFDAQKL-SPKNTDRIHGYKVVT 445
                +E + P    R  G++  +    G W    GLR + Q + +    D  H      
Sbjct: 372 -----EEAYVPQTLTRNHGLFLLEEYTAGAWRYELGLRHEWQDIDADGRPDTDH------ 420

Query: 446 MGSSEWSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKL 505
              S  S SA   + + P+++   S     R PS ++ Y    H+    T  +   N  L
Sbjct: 421 ---SGTSMSAGAVWTFAPQYSLGFSLTRSQRLPSAEELYANGPHA---ATRTVELGNVDL 474

Query: 506 RAETSDSFELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAGVKT 565
             ETS + E+  +   G+T F ++VF +  D+FI     G D   G    +Y+    V T
Sbjct: 475 EEETSHNAEITLRKFAGRTTFSLSVFRNEVDDFIYAADTGNDIGGGYREIEYRQQDAVLT 534

Query: 566 YGAEMSVMHRLDD 578
            GAE  V  +  D
Sbjct: 535 -GAEGEVRFQATD 546