Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., TonB-dependent vitamin B12 receptor from Pseudomonas stutzeri RCH2

 Score = 87.0 bits (214), Expect = 2e-21
 Identities = 159/708 (22%), Positives = 275/708 (38%), Gaps = 146/708 (20%)

Query: 2   KLSPVSAAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQG 61
           +  P +  +L             P   ++ VVTA R  Q   +   +V V++ E +E+  
Sbjct: 6   RFKPAAYVLLGSFPLSIGQLAAAPLDLQQQVVTATRTAQTAQQSLAAVTVIDRERIERSQ 65

Query: 62  KTELYDALNQEPGVSVT--GGAGRPQNITIRGMTGNRIAIVRDGIQ--SADGYGAADIND 117
            + L + L Q PGVS+   GG G+  ++ +RG   + + ++ DGI+  S  G GAA    
Sbjct: 66  ASSLPELLKQVPGVSLANNGGPGKSTSLFMRGTESDHVLVMIDGIKIGSVSGGGAA---- 121

Query: 118 KYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDY----LYHRDYYVDAA 173
                   L  +++I+VV+G  S+LYGS AIGGV+ I ++  +       +   Y     
Sbjct: 122 ---LQDLPLELIERIEVVRGPRSSLYGSEAIGGVIQIFTRKGQGQGVKPFFSAGY----- 173

Query: 174 LTYSGISNRYQGNHALAMRHGDGEALLTIDYWQGEETRNFN-----QDLYNREVDGY-NL 227
               G  + Y G+  ++   GDG    ++    G +T   N        Y R+ DGY NL
Sbjct: 174 ----GTHDTYTGSAGVS--GGDGRGWYSLGV-SGSDTDGINVKSADTSGYERDADGYRNL 226

Query: 228 G--FSHHYWLNDALRLKTHL---EYFDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQTRL 282
               S  Y  ++ L L  +L   +  +DY       +S           F      ++R+
Sbjct: 227 SATLSAGYRFDNGLELDANLLQAKSHNDYDSVNRARTS----------GFGANADGESRV 276

Query: 283 ASVGADYTANLSWMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDE 342
               A ++    W+ TL+                        AG    R E + + + D 
Sbjct: 277 FGTRARFSPLEPWLVTLQ------------------------AG----RSEDKSDAYQDG 308

Query: 343 ALGATLNAQKE---WQQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPA 399
              +  +++++   WQ    +   A    + G D+QR +       + D    D  FA  
Sbjct: 309 QFYSRFDSRRDTLSWQND--IELAAGHTLILGADHQRDEVNGTTVYAEDSRDNDGYFA-- 364

Query: 400 REYRFGVYGQDNLLLGDWTLAAGLRFDAQKLSPKNTDRI-HGYKVVTMGSSEWSPSASIS 458
            +Y  G  G+      DW L+   R D ++    +T  I +GY +     ++W       
Sbjct: 365 -QY-LGEVGRH-----DWQLSL-RRDDNEQFGQHDTGNIGYGYAL-----TDWLRGT--- 408

Query: 459 YQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSK 518
                     +SY   F+AP++++ Y            F    N +L AETS+S E+G  
Sbjct: 409 ----------ISYGTAFKAPTFNELY------------FPDYGNPELDAETSESLEVGLA 446

Query: 519 YDNGQTQFYVAVFYSIFDNFI--DVKQVGYDNATGSVIQQYQNIAGVKTYGAEMSVMHRL 576
             +G   + V  + ++ D+ I  D       N   + I+  + + G +  G + +  + L
Sbjct: 447 GQHGWGHWAVNAYRTVVDDLIAYDASISAPANVQEARIRGVELVLGSQLLGWDWNANYSL 506

Query: 577 DDRWSVENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWASAMSRVPTC 636
                 EN+     G +  N+  R    L      N   +R     RL    A S   + 
Sbjct: 507 ---LEPENRSA---GANRGNELARRAKQL-----FNLDLDR-----RL---GAFSVGASL 547

Query: 637 TTEQGKETECATT---TGWVSWDIGLNYQWNAQLSASFNVVNLLDREY 681
             E  +  + A T   +G+ + D+   Y+   +      V NLLD +Y
Sbjct: 548 HAEGQRYDDLANTRELSGYATLDLRGEYRITPEWRLQARVANLLDADY 595