Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 755 a.a., TonB-dependent receptor:TonB box, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  107 bits (266), Expect = 3e-27
 Identities = 173/769 (22%), Positives = 295/769 (38%), Gaps = 127/769 (16%)

Query: 14  LAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEP 73
           +A   A   TE    E V VTA R E+ L +V  +V+V+EGE LE+  +  +   + Q P
Sbjct: 45  MAETAAGQNTETVALESVTVTATRREESLQKVPVAVSVIEGEQLERDNRNGVASIVQQVP 104

Query: 74  GVSV-TGGAGRPQNITIRGM--------TGNRIAIVRDGIQSADGYGAADINDKYGRNTF 124
            ++  TG + +  ++ +RG+            +A V DG+  A          + G+ T 
Sbjct: 105 SLNFRTGASNKDTSLFVRGVGTISTSPGVEPTVATVIDGVVYA----------RPGQATL 154

Query: 125 SLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGISNRYQ 184
            L ++++I+V++G   TL+G  A  GV+ + +KAP +  +    Y+D +  YSG  +R  
Sbjct: 155 DLLDLERIEVLRGPQGTLFGKNASAGVLNVTTKAPTEATHG---YIDQSY-YSGNESR-- 208

Query: 185 GNHALAMRHGDGEALL------TIDYWQGEETRNFNQDLYNREVDGYNLGFSH---HYWL 235
                  R G G +L+      +I    G    N +  L  +EV+GYN   +     +  
Sbjct: 209 ------TRFGIGGSLIPQTLKGSITTLFGSYDGNVDNKLNGQEVNGYNRKGARGKLEFTP 262

Query: 236 NDALRLKTHLEYFDDYAKRREGT-------------SSIQKD-DKWDLVSFYEYQRSQTR 281
           ND +      +Y   +     G              + ++ D D  ++VS Y     ++ 
Sbjct: 263 NDDITFTLAADYMQSHDDAPNGVVTKALTPSFASALTPVRADSDNRNVVSDY-----RSH 317

Query: 282 LASVGADYTANLSWM---DTLEGKFYWRSTENITQTNRLMANDRSGAGILSY--RRELRD 336
           +  V    +  L W     TL     WR  +N     +    DR G    ++    +  D
Sbjct: 318 VEDVNKGLSGQLDWQLGDYTLTSITAWRGWDN----TQYQDGDRLGTVTAAFPGTEDKGD 373

Query: 337 EGFNDEALGATLNAQKEWQQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSG--DDLQADE 394
             FN  +    L A  + +  E++    Y        YQR          G  D     +
Sbjct: 374 LAFNQYSQELRL-ASPKGRFVEYVGGLFYMHGKSDETYQRTLITPTTHDRGIADYSTTTD 432

Query: 395 PFAPAREYRFGVYGQDNLLLGDWTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSE---- 450
            ++   E  F        + G       L +D +++S   T  + G +  T  S      
Sbjct: 433 SYSVFGETTFNFTPDLRAIAGARWTHDDLEYDHRRVSTSAT-TVSGIQPATSSSGSVDED 491

Query: 451 -WSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAET 509
             S    + Y       TY++Y+ G++ P+Y        + F  + P   +    L+ ET
Sbjct: 492 GKSGRLGLQYDLSDSVMTYITYSRGYKGPAY--------NVFFNMQP---RDTEALKPET 540

Query: 510 SDSFELGSKYD--NGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAGVKTYG 567
           S+++E+G K    N +    +AVF+S +DN+   +   +D+  G V+ +  N   V T G
Sbjct: 541 SNTWEVGLKATTWNNRLTTNLAVFHSEYDNY---QANFFDSVAGQVVTRLINAGSVSTEG 597

Query: 568 AEMSVMHRLDDRWSVENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWA 627
            E+    +          L Y   +           P   +   N   +    YS  +W 
Sbjct: 598 VELDYALQATRNLKFSGALSYTKARIDS-----FACPAGAAASCNVDGKTL-PYSP-DWK 650

Query: 628 SAMSRVPTCTTEQGKETECATTTGW---VSWDIGLNYQ--------WNAQLS-ASFNV-- 673
           S +    T   + G + E  T   W   V +DI  N          WNA ++ A +N   
Sbjct: 651 SYVRADYTIPLDNGLDIELGTDYSWQSEVQYDISQNPDTRQGAYGIWNASVALADYNSGW 710

Query: 674 ------VNLLDREYTRYQDVAGVTPSDTLYSTEP---GRYFTVHAKYVF 713
                  NL D+ Y+      G    + +Y + P    RYF V  +  F
Sbjct: 711 RVALLGKNLADKSYSPMLATGG----NYVYRSVPRDDERYFGVQLRKDF 755