Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 759 a.a., outer membrane receptor for ferrienterochelin and colicins from Dechlorosoma suillum PS

 Score = 75.9 bits (185), Expect = 7e-18
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 6   VSAAVLSVLA-AGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTE 64
           ++AA+ ++ + A  A  E   +    VVVTA+RIEQ   E   +V V+  + L+  G   
Sbjct: 13  LAAAIAALFSQAALAAGEQGETELGSVVVTASRIEQTTLEAPAAVTVVTADKLDASGAMR 72

Query: 65  LYDALNQE-PGVSVTGGAGRPQNI------TIRGMTGNRIAIVRDGIQSADGYGAADIND 117
           + DAL  + P   +  G G    I      + RG++  R+ ++ DG+  +DG  A  +  
Sbjct: 73  IGDALTAKVPSFYIRNGLGTSTRINTAPIVSFRGLSDGRVKMMVDGMSLSDG-NAGGLAS 131

Query: 118 KYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAP 159
             G     +  V+QI+VV G++S LYGS A+GGVV + +K P
Sbjct: 132 LMG---IPMGEVEQIEVVPGSASALYGSDAMGGVVNVITKVP 170



 Score = 36.2 bits (82), Expect = 6e-06
 Identities = 63/298 (21%), Positives = 108/298 (36%), Gaps = 24/298 (8%)

Query: 409 QDNLLLGD-WTLAAGLRFDAQKLSPKNTDRIHG-----YKVVTMGSSEWSPSASISYQWH 462
           QD + +GD  TL  G R D    S  N  +  G       +     S +SP  +  Y+  
Sbjct: 458 QDQIFVGDDLTLYLGGRHDRWS-SRGNMQKYVGTPRSNLDIPERSESAFSPKVAAVYRLT 516

Query: 463 PEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYD-N 521
           P  +   S    FRAPS  + Y     S    +  ++  +  L+ ETS S++LG +    
Sbjct: 517 PGTSLRSSLGKAFRAPSNYEMYATPSIS----SRRLLVADPDLKPETSTSWDLGVETALA 572

Query: 522 GQTQFYVAVFYSIFDNFIDVKQVGYDNATGSV--IQQYQNIAGVKTYGAEMSVMHRLDD- 578
           GQ       + +   + I  K   Y  +   V       N    K  G E++    L   
Sbjct: 573 GQGSAKATYYRTRLQDMIYRKLSPYSGSLADVDFFAVATNAGEAKVEGIELAAEMPLTSW 632

Query: 579 -------RWSVENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWASAMS 631
                   W+         G   + + +R +        L+ Q ++W AY    +     
Sbjct: 633 LRASASYTWTDSQITRDESGTGLQGKRLRYVPKNTAYFALDAQWQQWRAYLSAAYTGEQF 692

Query: 632 RVPTCTTEQGKETECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDREYTRYQDVAG 689
                 ++  K      +  W++ ++ L+YQ++     S  + NL D+ Y  Y  + G
Sbjct: 693 SKED-NSDVIKNVYGGVSKYWLA-NLKLSYQFDRNFKVSAGLNNLFDKTYYEYYQMPG 748