Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 657 a.a., catecholate siderophore receptor CirA from Pantoea sp. MT58

 Score = 73.2 bits (178), Expect = 4e-17
 Identities = 40/126 (31%), Positives = 74/126 (58%), Gaps = 1/126 (0%)

Query: 29  EEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEPGVSVTGGAGRPQNIT 88
           +++VVTA+ +EQ L +   S++V+  E L+++    L + L   PGV +T  +   Q ++
Sbjct: 38  DQMVVTASSVEQNLKDAPASISVITREDLQRKPVQNLKEVLKDVPGVQLTNESDNRQGVS 97

Query: 89  IRGMTGNRIAIVRDGIQSADGYGAADINDKYGRNTFSLSNVKQIQVVKGASSTLYGSGAI 148
           IRG+  +   I+ DG +  +   A   ++ +  +     ++++I+VV+G  S+LYGS A+
Sbjct: 98  IRGLGSSYTLILVDG-KRVNSRNAVFRHNDFDLSWIPAESIERIEVVRGPMSSLYGSDAL 156

Query: 149 GGVVII 154
           GGVV I
Sbjct: 157 GGVVNI 162



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 72/282 (25%), Positives = 112/282 (39%), Gaps = 52/282 (18%)

Query: 451 WSPSASISYQWHPEWNTYLSYNHGFRAPSY-----DKAYGASDHSFVPLTPFIIKPNNKL 505
           WSP A + Y           +   F+APS      D   G+   S        +  N  L
Sbjct: 394 WSPRAYLVYNATDTVTLKGGWASAFKAPSLLQLSPDWLSGSCRGSCN------VVGNKDL 447

Query: 506 RAETSDSFELGSKY--DNGQTQFYVA---VFYSIFDNFIDVKQV-------------GYD 547
           +AETS+S E G  Y    G  +   A   VF +  D+ I V +              G+D
Sbjct: 448 KAETSESMEFGLYYAGQRGWLEDVTASATVFQNDIDDMITVIRTANRSLAPSYPNFAGFD 507

Query: 548 NATGSVIQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKDGENQYVRTLTPLE- 606
            A+G+ I +Y N+   +  G E  +   + D+ ++     Y D +D  N   + L+ L  
Sbjct: 508 -ASGNPIFRYYNVNKARIRGLETELGLPVADKLNLRLNYTYNDARDLSNGGNKPLSELPF 566

Query: 607 --GSVQLNYQR-ERWDAYSRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDIGLNYQW 663
              +  L+++  E W  Y   N+    SR    T   G     AT  G+ +W+ G +YQ 
Sbjct: 567 HTTNATLDWKPLEDWSFYLSANY-KGKSR----TVTDGN----ATPGGYTTWNTGGSYQV 617

Query: 664 NAQLSASFNVVNLLDREYTRYQDVAGVTPSDTLYSTEPGRYF 705
           N  +     V+NL D++  R          D  Y+ +  RYF
Sbjct: 618 NKAVKIRAGVLNLTDKDLNR---------DDYSYNEDGRRYF 650