Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 697 a.a., heme transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (281), Expect = 5e-29
 Identities = 161/716 (22%), Positives = 286/716 (39%), Gaps = 91/716 (12%)

Query: 26  SHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEPGVSVTGGA-GRP 84
           + ++EV+V+A R+ + +SE + SVAV+  E L     + + + L  E  +++T G     
Sbjct: 45  TEFDEVLVSATRLSEKVSETSRSVAVVAEEQLNVSQASSVAEVLKNEANINLTNGPRATS 104

Query: 85  QNITIRGMTGNRIAIVRDGIQSADGYGAADINDKYGRNTFSLSNVKQIQVVKGASSTLYG 144
           Q + IRG++G+R+      +Q+ DG      +   G        +K I+V++G +S+L+G
Sbjct: 105 QGVEIRGLSGDRV------LQTIDGARQNTSSGHRGSYFMDPELLKSIEVIRGPASSLWG 158

Query: 145 SGAIGGVVIIESKAPEDYLYHRDYYVD-AALTYSGISNRYQGNHALAMRHGDGEALLTID 203
           SGA+GGVV   +K+ +D+L   + +       Y    +R + + A+  +    + LL   
Sbjct: 159 SGALGGVVAQNTKSAQDFLAPNETFGGYLKQGYDTNGDRTKTSGAVYGQQATVDWLLNGS 218

Query: 204 YWQGEETRNFNQDLYNREVDGYNLGFSHHYW-LNDALRLKTHLEYFDDYAKRREGTSSIQ 262
           Y+        N +         + G +   W  ++A RL          A+  +    + 
Sbjct: 219 YFDSNNINTGNDETLVNSASSGSSGLAKFGWQADEASRLALS-------ARVNKINELVP 271

Query: 263 KDDKWDLVSFYEYQRSQTRLASVGADYT---ANLSWMDTLEGKFYWRSTENITQTNRLMA 319
            +    + S     R +T   ++  +Y+   AN  ++DT   + YW ST+          
Sbjct: 272 SNPSAAVSSSVPLVRRKTDDQNITLNYSLAPANNPYLDT-HLQVYWNSTD--------YD 322

Query: 320 NDRSGAGILSYRRELRDEGF---NDEALGATLNAQKEWQQGEWLHQFAYGMSVDGHDYQR 376
            DR   G L    E R  G    N   LG T              +  YG  VDG+    
Sbjct: 323 EDRVTKGQLD-STEYRTVGINLNNSSQLGNT--------------KLTYG--VDGY-RDT 364

Query: 377 PKSIRRMESSGDDLQADEPFAPAREYRFGVYGQDNLLLGDWTLAAGLRFDAQKLSPKNTD 436
            K++R  +  G   Q  E               D  L     L A LR+D+ K    N +
Sbjct: 365 LKTVR--DDKGQVGQRPEDIDGETTVWGAFTRADVQLTQTVNLDAALRYDSFKNQSHNLN 422

Query: 437 RIHGYKVVTMGSSEWSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTP 496
                   +   +E SPS  +S+Q  P       Y+  FRAP+ ++ + +  H  +P  P
Sbjct: 423 -------ASADDTELSPSLGLSWQTQPWLTLSARYDQAFRAPTVEEMFSSGTHYCIPPIP 475

Query: 497 ----------FIIKPNNKLRAETSDSFELGSKYDNGQTQFYVAVFYSIFDNFID---VKQ 543
                     F   PN K     +   +   +++       +A+  +IF N +D   V+Q
Sbjct: 476 GFLPKGLCNTFATNPNLKSEVARNKELKADFRFNELAGDDELAITLNIFRNDVDDFIVQQ 535

Query: 544 VG--YDNATG-SVIQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKD-GENQYV 599
           V   Y    G      + N+   +  G E+S  +R+       N  G   G+D     Y+
Sbjct: 536 VSNPYRGIPGLEQTTSWNNVEDAQLTGFELSGRYRIGQTRLAMN-YGQTRGEDRNTGDYI 594

Query: 600 RTLTPLEGSVQLNYQRERWDAY--SRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDI 657
             +   + +V L+      D    +R+ + ++ +  PT      K  E      +++W+ 
Sbjct: 595 EGMPANKFNVDLSQGIMEGDMKLGTRVTYVASQTNTPT-GYSVAKYDEYTLWDVYLAWEP 653

Query: 658 GLNYQWNAQLSASFNVVNLLDREYTRYQDVAGVTPSDTLYSTEPGRYFTVHAKYVF 713
            +     + L   F + N+ D +Y +           TLY  +PGR   + A+Y+F
Sbjct: 654 AMGVM--SGLRVDFAIENIGDEKYQQ--------AWQTLY--QPGRNMKLSARYMF 697