Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 747 a.a., TonB-dependent receptor, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  291 bits (746), Expect = 6e-83
 Identities = 227/758 (29%), Positives = 359/758 (47%), Gaps = 56/758 (7%)

Query: 1   MKLSPVSAAVLSVLAA--GFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLE 58
           MK  P+S   L+V +A   +A  + +P   E +VV+ +R+EQ + +VAGS+ V++ E +E
Sbjct: 1   MKPLPLSLCALAVASALPVWAEEQAKPLINEVIVVSGSRMEQNIEQVAGSILVIDEEAIE 60

Query: 59  KQGKTELYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGA--ADIN 116
           +    +       E  V + GGAG+P ++TIRG+ GNR+ +V+DG++  + Y +      
Sbjct: 61  RNMSNDFGSLFRNESAVDIKGGAGKPTSVTIRGIGGNRVMMVKDGVRVNNQYASPLGPGA 120

Query: 117 DKYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTY 176
           +  GR    + ++KQI+VVK A+ST+YGS A+GGVV++ +K   DYL   DYYV     Y
Sbjct: 121 EGTGRGLTEVQSLKQIEVVKAAASTMYGSDALGGVVVMRTKDASDYLRGEDYYVSLNAGY 180

Query: 177 SGISNRYQGNHALAMRHGDGEALLTIDYWQGEETRNFNQDLYNREVDGYNLGFSHHYWLN 236
           SGI+N Y G    A  + D E LLT  + +GEE  N+       ++   +L F   Y  N
Sbjct: 181 SGINNEYSGGFTSAAAYSDFENLLTYQHRKGEELPNYFDTQPESDLLQDSLLFKSKYRFN 240

Query: 237 DALRLKTHLEYFDDYAKRREGTSSIQK--DDKWDLVSFYEYQRSQTRLASVGADYTANLS 294
           +   ++  L+Y +   +R E   +  +   ++ D     +      +L S  A Y     
Sbjct: 241 EHTTVQLTLDYLEQTLERWEDKLNRAQVPQERIDTDRDTQVINGALQLRSDKATYL---- 296

Query: 295 WMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDEALGATLNAQKEW 354
             D L    Y+  TE +   +R   + R+ A  L+   E RD  F D+ LG T    K  
Sbjct: 297 -HDDLTVTAYFGQTEQL--EHRDYFDLRTAARPLT---EYRDYEFKDQRLGLTSTFSKYI 350

Query: 355 QQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEP--FAPAREYRFGVYGQDN- 411
               + HQ  YGM  +     R ++   + S+G D Q + P  FA     R G++ QD+ 
Sbjct: 351 GAEGYGHQLTYGMDYEWSQMMRHRN-NNIASNGGDWQTETPFTFADTDSNRLGLFLQDDI 409

Query: 412 -LLLGDWTLAAGLRFDAQKLSPKNTDRIHGYK----VVTMGSSEWSPSASISYQWHPEWN 466
            LL GD  L  GLR+D  + SP     +   K       M  + WSP   + Y+     +
Sbjct: 410 TLLNGDLNLIGGLRYDYFRNSPDQQQAMEAGKDPADFAVMSDTFWSPKVGLVYKLTDTVS 469

Query: 467 TYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYDNGQTQF 526
            Y  Y +G++ P+ D+ +G  +     +T  II+ N  L++E S ++ELG + ++  TQ+
Sbjct: 470 AYAQYAYGYKMPTPDQKWGELEVDGGSMTDVIIQANYDLKSEQSHTWELGIRGNHADTQY 529

Query: 527 YVAVFYSIFDNFIDVKQVGYDNAT-GSVIQ------QYQNIAGVKTYGAEMSVMHRLDDR 579
            +  F +   +F D + V +     G V+Q      QY N   V  YGAE    H L D 
Sbjct: 530 ELTTFDTHAVDFSDWQYVSFKPPVFGPVMQPMEFKYQYFNRDQVTLYGAEAQANHWLTDS 589

Query: 580 WSVENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQRE----RWDAYSRLNWASAMSRV-- 633
             +   + Y  G D   Q + +++PL+G++ +N+  +      D  + + WA  M R   
Sbjct: 590 IELWGNISYTHGTDENGQNLNSVSPLKGNLGVNWYSDIGGMETDIGAVVRWADKMDRTND 649

Query: 634 ------PTCTTEQ--GKET--ECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDREYTR 683
                   C   Q   KE+  E   T G+   D+ +       L     V NL D+EY  
Sbjct: 650 INLTIDDICVMGQCIPKESFNEVYNTAGYAVLDLTMGLHVTDNLHLRAGVYNLFDKEYVD 709

Query: 684 YQDVAGVTP---SDTLY-----STEPGRYFTVHAKYVF 713
           Y DVAG +    + T+       T+PGRYF +   Y F
Sbjct: 710 YADVAGQSVFLLNSTMNLQKDDFTQPGRYFNLSMNYQF 747