Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 789 a.a., TonB-dependent receptor from Klebsiella michiganensis M5al

 Score =  106 bits (265), Expect = 4e-27
 Identities = 182/796 (22%), Positives = 300/796 (37%), Gaps = 143/796 (17%)

Query: 7   SAAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELY 66
           SA      A   + A ++ S  E + VTA     PL + AGS   +  + L+ +G  +  
Sbjct: 28  SAGAADTTAKTTSSASSDDSS-ERMTVTA---PAPLLK-AGSEHSISAQELQDKGANDFG 82

Query: 67  DALNQEPGVSVTGGAGRPQN------------ITIRGMTGNRIAIVRDGIQSADGYGAAD 114
             +  EP +S TG +G   N              IRGM  NR+ I  DGI   +  G + 
Sbjct: 83  SIMRYEPLISATGASGGSGNGKSGFDRGGYTGYNIRGMESNRVGIDVDGIAQPNATGRSY 142

Query: 115 INDKYGRNTFSLSN-------VKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRD 167
            + + G NTF +            I +  GA+ST   + AIGG V    K+ +DYL+   
Sbjct: 143 AS-RAGLNTFGMGRDYIDPYMYGSIDIQSGATSTDTANSAIGGNVSFRPKSADDYLHPGK 201

Query: 168 YYVDAALTY-SGISNRYQGNHALAMRHGDGEALLTIDYW---QGEETRNFNQDLYNREVD 223
               +A  Y SG  +  +  H      G  E L  I  +    G+ET N +  + +   +
Sbjct: 202 ---TSAFGYRSGYDSSDRSWHNGVTVAGGDETLRGIFVYSRRDGQETENNSGTVDSYPAN 258

Query: 224 GYNLGF--SHHYWLNDALRLKTHLEYFDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQTR 281
            ++  F  S  +  ND  +L +  +Y+     +   T     D   + V     Q SQTR
Sbjct: 259 WHSNAFMASGIWQPNDEHKLTSTFDYY----HKTNHTHYDAWDSSGNSVIGTSNQTSQTR 314

Query: 282 L--ASVGADYTANLSWMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEGF 339
               S+  D+T    ++D++  K Y++ TE         A+D +                
Sbjct: 315 RWGLSLKDDWTPMNDYIDSVSTKVYYQHTE---------AHDWT--------------YM 351

Query: 340 NDEALGATLNAQKEWQQGEWLHQFAYGMSVDGHDY-----------QRPKSIRRMESSGD 388
            D    A      ++    W  Q A   S+  HD            QRP +     S+  
Sbjct: 352 PDSVTRAMQTVSSDYDTDTWGIQSALAKSIGRHDLSAGFNASTTKTQRPLTQSPTPSAFS 411

Query: 389 DLQADEPFAPAREYRFGVYGQDNLLLG----DWTLAAGLRFDAQKLSPKNTDRIHGYKVV 444
            +   +P A +R Y    + QD +       ++ +  G+R   Q   P+N   +     V
Sbjct: 412 QIM--QPDADSRGYIVAGFLQDKINFDLDEHNFAVIPGIRVMHQSTRPENVSDLANNSSV 469

Query: 445 TMGS-----------SEWSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASD--HSF 491
             GS           ++  PS  + Y   P   TYL Y  G + P+  + YG+ +   S+
Sbjct: 470 LTGSDVSNLYGKNADTQALPSLVLQYDITPRLMTYLQYQRGAQFPNASQLYGSWNLGSSY 529

Query: 492 VPLTPFIIKPNNKLRAETSDSFELGSKYDNGQ-TQFYVAVFYSIFDNFIDVKQ------- 543
                + +  N  L+ ETSD+ E G K +  +      A+FY+ + NFI   +       
Sbjct: 530 AGRAQYALIGNTDLKTETSDNVEWGMKGEVAEGITMRTALFYNTYKNFIAYTRYTRANNP 589

Query: 544 VGYDNATGSV--IQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKL------GYVDGKD-- 593
           V + N   ++  I Q +N      YG E+S        +   N L      GY +G+   
Sbjct: 590 VQFTNVPSNIYTIYQAENRDKAYIYGGEISAKFNFGTWFEEVNGLSATLAYGYSEGQSKS 649

Query: 594 --GENQYV--RTLTPLEGSVQLNY----------------QRERWDAYSRLNWASAMSRV 633
               ++YV   ++ P++  V + +                + +R  A SR ++ +  S +
Sbjct: 650 SYSGDKYVDLDSVAPMKAIVGVAWDDPAKVYGTALTATFVKGKRATATSRESYTNTGSAI 709

Query: 634 PTCTTEQGKETECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDREYTRYQDVAGVTPS 693
              T+E  +            W +  N + N        V N+ DR+Y  Y     +  S
Sbjct: 710 TDSTSEYMRVPGYGMLDWTAYWQVAKNVRVNG------GVYNITDRKYWDYLSSRNIEMS 763

Query: 694 ------DTLYSTEPGR 703
                 D   +  PGR
Sbjct: 764 TNQDANDRALAVMPGR 779