Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 657 a.a., catecholate siderophore receptor CirA from Klebsiella michiganensis M5al

 Score = 75.1 bits (183), Expect = 1e-17
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 1/156 (0%)

Query: 2   KLSPVSAAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQG 61
           +L+P   A L       A       + E +VVTA   EQ + +   S++V+  + L+++ 
Sbjct: 3   RLNPFVRAGLCASVVSLAFPALADVNEETLVVTAAATEQSVKDAPASISVITQQDLQRRP 62

Query: 62  KTELYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADINDKYGR 121
              L D L + PGV +T      + ++IRG++     I+ DG +  +   A   ++ +  
Sbjct: 63  VQNLKDVLREVPGVQLTNEGDNRKGVSIRGLSSGYTLILVDG-KRVNSRNAVFRHNDFDL 121

Query: 122 NTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESK 157
           N   +  +++I+VV+G  S+LYGS A+GGVV I +K
Sbjct: 122 NWIPVDAIERIEVVRGPMSSLYGSDALGGVVNIITK 157



 Score = 49.7 bits (117), Expect = 5e-10
 Identities = 56/228 (24%), Positives = 91/228 (39%), Gaps = 42/228 (18%)

Query: 502 NNKLRAETSDSFELGSKYDNGQ-----TQFYVAVFYSIFDNFIDVKQV-------GYDNA 549
           N  L+ ETS+SFELG  Y   +      +  V  F +  D+ ID+ +        GY N 
Sbjct: 441 NPDLKPETSESFELGLYYRGEEGWLEGVEGSVTTFQNNVDDMIDILRTSSASEAPGYPNF 500

Query: 550 TG--------SVIQQYQNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKD---GENQY 598
            G          I +Y N+   +  G E  +     D W +     Y DG+D   G ++ 
Sbjct: 501 VGWKTVNGKRVPIFRYFNVNKARIKGVETELKVPFGDEWKLTVNYTYNDGRDLSNGGDKP 560

Query: 599 VRTLTPLEGSVQLNYQ-RERWDAYSRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDI 657
           ++TL     +  L+++  + W  Y   N+      V    +  GK     T  G+  +DI
Sbjct: 561 LQTLPFHTANGTLDWKPLDDWSFYVTANYTGEQRSV----SATGK-----TPGGYTMFDI 611

Query: 658 GLNYQWNAQLSASFNVVNLLDREYTRYQDVAGVTPSDTLYSTEPGRYF 705
           G  +     +     V+N+ D++ +R          D  Y+ E  RYF
Sbjct: 612 GAAWNVTKNVKLRSGVLNVGDKDLSR---------DDYSYTEEGRRYF 650