Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., vitamin B12/cobalamin outer membrane transporter from Klebsiella michiganensis M5al

 Score = 96.7 bits (239), Expect = 3e-24
 Identities = 155/682 (22%), Positives = 269/682 (39%), Gaps = 93/682 (13%)

Query: 8   AAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYD 67
           A++++ L+        + S+ + +VVTANR +QP++ V     V+  E +E+    +L D
Sbjct: 5   ASLMTALSVTAFSGWAQDSNSDTLVVTANRFQQPVNTVLAPTDVVTREDIERWQAKDLND 64

Query: 68  ALNQEPGVSV--TGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADINDKYGRNTFS 125
            + + PGV V   GG G+  ++ IRG    ++ ++ DG+          I +    N   
Sbjct: 65  VMRRLPGVDVAQNGGMGQSSSLFIRGTEAKQVLVLVDGVPMV----RPGITNNPDLNQIP 120

Query: 126 LSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGISNRYQG 185
           LS V++++ ++G  S +YGSGA+GGV+        + + H D          G     Q 
Sbjct: 121 LSLVQRVEYIRGPRSAIYGSGAMGGVI--------NVITHSDKEQSKITAGVGSKGYQQY 172

Query: 186 NHALAMRHGDGEALLTIDYWQGEETRNFN-QDLYNREVDGYNLGFSHH-YWLNDALRLKT 243
           +  L  R GD  A +   Y   E  + FN Q     E DG   GF +  +W   +L  K 
Sbjct: 173 DGTLRHRFGDTVATVAGSY---EGNKGFNVQPGSTWEHDGDRDGFRNKTFW--GSLEHKF 227

Query: 244 HLEYFDDYAKRREGTSSIQKDDKWDLVSFYEYQRSQTRLASVGADYTANLSWMDTLEGKF 303
           + E FD + +    T+    +  +DL S        +   S   +   N SW   L    
Sbjct: 228 N-ENFDGFFRGHSYTN----NSDYDLGS-----PPYSPAYSADENQLYNQSWDAGLNFNS 277

Query: 304 YWRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDEALGATLNAQKEWQQGEWLHQ- 362
              S++ I    ++   + S      Y R      +ND   G TL+   +    +W +  
Sbjct: 278 GIYSSQLIASYQKVKDYNYSSI----YGR------YND---GTTLDRMTQ-HNLQWGNNV 323

Query: 363 -FAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREYRFGVYGQDNLLLGDWTLAA 421
              +G    G D+Q+ +      +  D  + D           G+Y       GD TL A
Sbjct: 324 IVGHGSVSAGVDWQQQRLTSSDTTMSDTYKRDNT---------GLYLTGQQQFGDVTLEA 374

Query: 422 GLRFDAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWHPEWNTYLSYNHGFRAPSYD 481
             R D         D   G+         W  +A   +++   +   L Y  GF APS  
Sbjct: 375 SGRED--------HDEQFGW------HGTWQTTA--GWEFVENYRLTLGYGTGFLAPSLG 418

Query: 482 KAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYDNGQTQFYVAVFYSIFDNFIDV 541
           + +G+        T F I  N  L+ E S  +E G +   G   + ++ ++    N I  
Sbjct: 419 QQFGS--------TRFGINANPNLKPEESKQWEAGLEGLTGPVDWRLSAYHYKITNLIT- 469

Query: 542 KQVGYDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDR-WSVENKLGYVDGKDGEN-QYV 599
               Y +   +   +Y NI      G E +    +D   +S    L YVD ++ +N + +
Sbjct: 470 ----YYSDPVTYEGEYDNINAATIKGVEWT--GSVDTGIFSHRVTLQYVDPRNDDNGEVL 523

Query: 600 RTLTPLEGSVQLNYQRERWDAYSRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDIGL 659
              +  +   QL++    +D    ++W     R    T++         +   V  D+  
Sbjct: 524 ARRSKRQAKYQLDW--SVFDVDMDVSWQYYGKRYDNNTSQYNNTQRILPSYSTV--DVSA 579

Query: 660 NYQWNAQLSASFNVVNLLDREY 681
           +Y    +L+    + NL D++Y
Sbjct: 580 SYPITDRLTVRGKIANLFDKDY 601